Tom Vercauteren

ORCID

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 259

Top Venues

CoRR

Int. J. Comput. Assist. Radiol. Surg.

Medical Image Anal.

MICCAI (2)

Mines ParisTech, France (PHD)

Education History

Mines ParisTech, France

PHD

Publications

Oluwatosin Alabi, Tom Vercauteren, Miaojing Shi
Multitask Learning in Minimally Invasive Surgical Vision: A Review. CoRR (2024)
Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III
Unified Brain MR-Ultrasound Synthesis using Multi-Modal Hierarchical Representations. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR (2023)
Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso
A 3D generative model of pathological multi-modal MR images and segmentations. CoRR (2023)
Muhammad Asad, Helena Williams, Indrajeet Mandal, Sarim Ather, Jan Deprest, Jan D'hooge, Tom Vercauteren
Adaptive Multi-scale Online Likelihood Network for AI-assisted Interactive Segmentation. CoRR (2023)
Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR (2023)
Mirza Awais Ahmad, Mouloud Ourak, Dirk Wenmakers, Ignacio Valenzuela, David Basurto, Sébastien Ourselin, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten
Development and validation of a flexible fetoscope for fetoscopic laser coagulation. Int. J. Comput. Assist. Radiol. Surg. 18 (9) (2023)
Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III
Unified Brain MR-Ultrasound Synthesis Using Multi-modal Hierarchical Representations. MICCAI (10) (2023)
Christopher E. Mower, João Moura, Nazanin Zamani Behabadi, Sethu Vijayakumar, Tom Vercauteren, Christos Bergeles
OpTaS: An Optimization-based Task Specification Library for Trajectory Optimization and Model Predictive Control. ICRA (2023)
Mirza Awais Ahmad, Mouloud Ourak, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten
Towards in-utero Navigational Assistance: A Multi Task Neural Network for Segmentation and Pose Estimation in Fetoscopy. ISMR (2023)
Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren
Deep Homography Prediction for Endoscopic Camera Motion Imitation Learning. MICCAI (9) (2023)
Helena Williams, João Pedrosa, Muhammad Asad, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge
DEEPBEAS3D: Deep Learning and B-Spline Explicit Active Surfaces. CoRR (2023)
Christopher E. Mower, João Moura, Nazanin Zamani Behabadi, Sethu Vijayakumar, Tom Vercauteren, Christos Bergeles
OpTaS: An Optimization-based Task Specification Library for Trajectory Optimization and Model Predictive Control. CoRR (2023)
Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83 (2023)
Muhammad Asad, Helena Williams, Indrajeet Mandal, Sarim Ather, Jan Deprest, Jan D'hooge, Tom Vercauteren
Adaptive Multi-scale Online Likelihood Network for AI-Assisted Interactive Segmentation. MICCAI (2) (2023)
Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferndinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR (2023)
Jianghao Wu, Guotai Wang, Ran Gu, Tao Lu, Yinan Chen, Wentao Zhu, Tom Vercauteren, Sébastien Ourselin, Shaoting Zhang
UPL-SFDA: Uncertainty-aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. CoRR (2023)
Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. CoRR (2023)
Jianghao Wu, Dong Guo, Lu Wang, Shuojue Yang, Yuanjie Zheng, Jonathan Shapey, Tom Vercauteren, Sotirios Bisdas, Robert Bradford, Shakeel R. Saeed, Neil Kitchen, Sébastien Ourselin, Shaoting Zhang, Guotai Wang
TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. Neurocomputing 544 (2023)
Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88 (2023)
Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging. Int. J. Comput. Assist. Radiol. Surg. 18 (6) (2023)
Luis C. García-Peraza-Herrera, Conor C. Horgan, Sébastien Ourselin, Michael Ebner, Tom Vercauteren
Hyperspectral image segmentation: a preliminary study on the Oral and Dental Spectral Image Database (ODSI-DB). Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11 (4) (2023)
Zijian Zhou, Oluwatosin Alabi, Meng Wei, Tom Vercauteren, Miaojing Shi
Text Promptable Surgical Instrument Segmentation with Vision-Language Models. CoRR (2023)
Yang Liu, Maxence Boels, Luis C. García-Peraza-Herrera, Tom Vercauteren, Prokar Dasgupta, Alejandro Granados, Sébastien Ourselin
LoViT: Long Video Transformer for Surgical Phase Recognition. CoRR (2023)
Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. MICCAI (9) (2023)
Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation. IPMI (2023)
Meng Wei, Charlie Budd, Luis C. García-Peraza-Herrera, Reuben Dorent, Miaojing Shi, Tom Vercauteren
SegMatch: A semi-supervised learning method for surgical instrument segmentation. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI (2023)
Martin Huber, Christopher E. Mower, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles
LBR-Stack: ROS 2 and Python Integration of KUKA FRI for Med and IIWA Robots. CoRR (2023)
Mengjie Shi, Tom Vercauteren, Wenfeng Xia
Learning-based sound speed reconstruction and aberration correction in linear-array photoacoustic/ultrasound imaging. CoRR (2023)
Luis C. García-Peraza-Herrera, Sébastien Ourselin, Tom Vercauteren
VideoSum: A Python Library for Surgical Video Summarization. CoRR (2023)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI (2023)
Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: Application to surgical imaging. CoRR (2023)
Jianghao Wu, Guotai Wang, Ran Gu, Tao Lu, Yinan Chen, Wentao Zhu, Tom Vercauteren, Sébastien Ourselin, Shaoting Zhang
UPL-SFDA: Uncertainty-Aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. IEEE Trans. Medical Imaging 42 (12) (2023)
Navodini Wijethilake, Steve Connor, Anna Oviedova, Rebecca Burger, Tom Vercauteren, Jonathan Shapey
A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma. CoRR (2023)
Charlie Budd, Luis C. García-Peraza-Herrera, Martin Huber, Sébastien Ourselin, Tom Vercauteren
Rapid and robust endoscopic content area estimation: a lean GPU-based pipeline and curated benchmark dataset. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11 (4) (2023)
Guotai Wang, Shaoting Zhang, Sharon X. Huang, Tom Vercauteren, Dimitris N. Metaxas
Editorial for special issue on explainable and generalizable deep learning methods for medical image computing. Medical Image Anal. 84 (2023)
Zijian Zhou, Oluwatosin Alabi, Meng Wei, Tom Vercauteren, Miaojing Shi
Text Promptable Surgical Instrument Segmentation with Vision-Language Models. NeurIPS (2023)
Luis C. García-Peraza-Herrera, Conor C. Horgan, Sébastien Ourselin, Michael Ebner, Tom Vercauteren
Hyperspectral Image Segmentation: A Preliminary Study on the Oral and Dental Spectral Image Database (ODSI-DB). CoRR (2023)
Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles
Intra-operative OCT (iOCT) Super Resolution: A Two-Stage Methodology Leveraging High Quality Pre-operative OCT Scans. OMIA@MICCAI (2022)
Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro
Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Data. CoRR (2022)
Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren
A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation. CoRR (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41 (11) (2022)
Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi
A Multi-organ Point Cloud Registration Algorithm for Abdominal CT Registration. WBIR (2022)
Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat
Driving Points Prediction for Abdominal Probabilistic Registration. MLMI@MICCAI (2022)
Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR (2022)
Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI (2022)
Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi
A multi-organ point cloud registration algorithm for abdominal CT registration. CoRR (2022)
Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRR (2022)
Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRL (2022)
Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR (2022)
Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso
Can segmentation models be trained with fully synthetically generated data? CoRR (2022)
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75 (2022)
Muhammad Asad, Reuben Dorent, Tom Vercauteren
FastGeodis: Fast Generalised Geodesic Distance Transform. CoRR (2022)
Muhammad Asad, Reuben Dorent, Tom Vercauteren
FastGeodis: Fast Generalised Geodesic Distance Transform. J. Open Source Softw. 7 (79) (2022)
Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten
Robotic Endoscope Control Via Autonomous Instrument Tracking. Frontiers Robotics AI 9 (2022)
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR (2022)
Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso
Can Segmentation Models Be Trained with Fully Synthetically Generated Data? SASHIMI@MICCAI (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR (2022)
Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. DALI@MICCAI (2022)
Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI (2022)
Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR (2022)
M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng
MONAI: An open-source framework for deep learning in healthcare. CoRR (2022)
Andres Diaz-Pinto, Sachidanand Alle, Alvin Ihsani, Muhammad Asad, Vishwesh Nath, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. CoRR (2022)
Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren
Deep homography estimation in dynamic surgical scenes for laparoscopic camera motion extraction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10 (3) (2022)
Muhammad Asad, Lucas Fidon, Tom Vercauteren
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. CoRR (2022)
Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Fadida-Specktor, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR (2022)
Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10 (4) (2022)
Charlie Budd, Luis C. García-Peraza-Herrera, Martin Huber, Sébastien Ourselin, Tom Vercauteren
Rapid and robust endoscopic content area estimation: A lean GPU-based pipeline and curated benchmark dataset. CoRR (2022)
Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat
Driving Points Prediction For Abdominal Probabilistic Registration. CoRR (2022)
Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR (2022)
Mengjie Shi, Semyon Bodian, Simeon J. West, Sanjayan Sathasivam, Ross J. Gordon, Paul Collier, Tom Vercauteren, Adrien E. Desjardins, Sacha Noimark, Wenfeng Xia
Enhanced Photoacoustic Visualisation of Clinical Needles by Combining Interstitial and Extracorporeal Illumination of Elastomeric Nanocomposite Coatings. Sensors 22 (17) (2022)
Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro
Motion correction and volumetric reconstruction for fetal functional magnetic resonance imaging data. NeuroImage 255 (2022)
Charalampos Komninos, Theodoros Pissas, Lina Mekki, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles
Surgical biomicroscopy-guided intra-operative optical coherence tomography (iOCT) image super-resolution. Int. J. Comput. Assist. Radiol. Surg. 17 (5) (2022)
Christian Baker, Miguel Xochicale, Fang-Yu Lin, Sunish Mathews, Francois Joubert, Dzhoshkun I. Shakir, Richard Miles, Charles A. Mosse, Tianrui Zhao, Weidong Liang, Yada Kunpalin, Brian Dromey, Talisa Mistry, Neil J. Sebire, Edward Zhang, Sébastien Ourselin, Paul C. Beard, Anna L. David, Adrien E. Desjardins, Tom Vercauteren, Wenfeng Xia
Intraoperative Needle Tip Tracking with an Integrated Fibre-Optic Ultrasound Sensor. Sensors 22 (23) (2022)
Muhammad Asad, Lucas Fidon, Tom Vercauteren
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. MIDL (2022)
Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang
MIDeepSeg: Minimally interactive segmentation of unseen objects from medical images using deep learning. Medical Image Anal. 72 (2021)
Marta Bianca Maria Ranzini, Lucas Fidon, Sébastien Ourselin, Marc Modat, Tom Vercauteren
MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation. CoRR (2021)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI (2021)
Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles
Intra-operative OCT (iOCT) Image Quality Enhancement: A Super-Resolution Approach Using High Quality iOCT 3D Scans. OMIA@MICCAI (2021)
Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. CoRR (2021)
Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin
Image Compositing for Segmentation of Surgical Tools without Manual Annotations. CoRR (2021)
M. Jorge Cardoso, Marc Modat, Tom Vercauteren, Sébastien Ourselin
Scale factor point spread function matching: Beyond aliasing in image resampling. CoRR (2021)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR (2021)
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR (2021)
Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic Camera Motion Extraction. CoRR (2021)
Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren
Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge. BrainLes@MICCAI (2) (2021)
Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. IEEE Trans. Medical Imaging 40 (2) (2021)
Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. CoRR (2021)
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) (2021)
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR (2021)
Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. Medical Image Anal. 67 (2021)
Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, Alexander Hammers, David Atkinson, Kris Thielemans, Brian F. Hutton, Manuel Jorge Cardoso, Sébastien Ourselin
Imitation learning for improved 3D PET/MR attenuation correction. Medical Image Anal. 71 (2021)
Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR (2021)
Martin Huber, John Bason Mitchell, Ross Henry, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles
Homography-based Visual Servoing with Remote Center of Motion for Semi-autonomous Robotic Endoscope Manipulation. ISMR (2021)
Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren
Intrapapillary Capillary Loop Classification in Magnification Endoscopy: Open Dataset and Baseline Methodology. CoRR (2021)
Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren
Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. CoRR (2021)
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40 (7) (2021)
Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren
Partial supervision for the FeTA challenge 2021. CoRR (2021)

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Tom Vercauteren