Ali Gholipour

ORCID

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 82

Top Venues

CoRR

IEEE Trans. Medical Imaging

NeuroImage

Medical Image Anal.

Publications

Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
Anatomically Constrained Tractography of the Fetal Brain. CoRR (2024)
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Camilo Calixto, Zeljka Krsnik, Davood Karimi, Meritxell Bach Cuadra
Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study. Medical Image Anal. 95 (2024)
Haykel Snoussi, Davood Karimi, Onur Afacan, Mustafa Utkur, Ali Gholipour
HAITCH: A Framework for Distortion and Motion Correction in Fetal Multi-Shell Diffusion-Weighted MRI. CoRR (2024)
Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
Anatomically constrained tractography of the fetal brain. NeuroImage 297 (2024)
Jian Wang, Razieh Faghihpirayesh, Polina Golland, Ali Gholipour
SpaER: Learning Spatio-temporal Equivariant Representations for Fetal Brain Motion Tracking. CoRR (2024)
Yihan Wu, Ali Gholipour, Lana Vasung, Davood Karimi
A Computational Framework for Characterizing Normative Development of Structural Brain Connectivity in the Perinatal Stage. ISBI (2023)
Hamza Kebiri, Ali Gholipour, Meritxell Bach Cuadra, Davood Karimi
Direct segmentation of brain white matter tracts in diffusion MRI. CoRR (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Automatic brain pose estimation in fetal MRI. Medical Imaging: Image Processing (2023)
Rui Nian, Guoyao Zhang, Yao Sui, Yuqi Qian, Qiuying Li, Mingzhang Zhao, Jianhui Li, Ali Gholipour, Simon K. Warfield
3D Brainformer: 3D Fusion Transformer for Brain Tumor Segmentation. CoRR (2023)
Davood Karimi, Caitlin K. Rollins, Clemente Velasco-Annis, Abdelhakim Ouaalam, Ali Gholipour
Learning to segment fetal brain tissue from noisy annotations. Medical Image Anal. 85 (2023)
Davood Karimi, Ali Gholipour
Improving Calibration and Out-of-Distribution Detection in Deep Models for Medical Image Segmentation. IEEE Trans. Artif. Intell. 4 (2) (2023)
Yihan Wu, Lana Vasung, Camilo Calixto, Ali Gholipour, Davood Karimi
Characterizing normal perinatal development of the human brain structural connectivity. CoRR (2023)
Davood Karimi, Hamza Kebiri, Ali Gholipour
TBSS++: A novel computational method for Tract-Based Spatial Statistics. CoRR (2023)
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Davood Karimi, Meritxell Bach Cuadra
Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning. MICCAI (7) (2023)
Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88 (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Fetal-BET: Brain Extraction Tool for Fetal MRI. CoRR (2023)
Rizhong Lin, Ali Gholipour, Jean-Philippe Thiran, Davood Karimi, Hamza Kebiri, Meritxell Bach Cuadra
Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains. CoRR (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Deep Learning Framework for Real-time Fetal Brain Segmentation in MRI. CoRR (2022)
Arvind Balachandrasekaran, Davood Karimi, Camilo Jaimes, Ali Gholipour
Subject-specific quantitative susceptibility mapping using patch based deep image priors. CoRR (2022)
Davood Karimi, Ali Gholipour
Diffusion tensor estimation with transformer neural networks. Artif. Intell. Medicine 130 (2022)
Davood Karimi, Haoran Dou, Ali Gholipour
Medical Image Segmentation Using Transformer Networks. IEEE Access 10 (2022)
Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans. Medical Imaging 41 (6) (2022)
Arvind Balachandrasekaran, Alexander Li Cohen, Onur Afacan, Simon K. Warfield, Ali Gholipour
Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans. Medical Imaging 41 (1) (2022)
Davood Karimi, Ali Gholipour
Diffusion Tensor Estimation with Transformer Neural Networks. CoRR (2022)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Deep Learning Framework for Real-Time Fetal Brain Segmentation in MRI. PIPPI@MICCAI (2022)
Davood Karimi, Caitlin K. Rollins, Clemente Velasco-Annis, Abdelhakim Ouaalam, Ali Gholipour
Learning to segment fetal brain tissue from noisy annotations. CoRR (2022)
Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage 257 (2022)
Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Fadida-Specktor, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR (2022)
Davood Karimi, Ali Gholipour
Atlas-Powered Deep Learning (ADL) - Application to Diffusion Weighted MRI. MICCAI (1) (2022)
Davood Karimi, Ali Gholipour
Atlas-powered deep learning (ADL) - application to diffusion weighted MRI. CoRR (2022)
Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
MRI Super-Resolution Through Generative Degradation Learning. MICCAI (6) (2021)
Davood Karimi, Serge Vasylechko, Ali Gholipour
Convolution-Free Medical Image Segmentation Using Transformers. MICCAI (1) (2021)
Davood Karimi, Camilo Jaimes, Fedel Machado-Rivas, Lana Vasung, Shadab Khan, Simon K. Warfield, Ali Gholipour
Deep learning-based parameter estimation in fetal diffusion-weighted MRI. NeuroImage 243 (2021)
Davood Karimi, Serge Vasylechko, Ali Gholipour
Convolution-Free Medical Image Segmentation using Transformers. CoRR (2021)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif. Intell. Medicine 116 (2021)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Calibrated Diffusion Tensor Estimation. CoRR (2021)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Medical Image Anal. 72 (2021)
Lulu Wang, Jinglong Du, Ali Gholipour, Huazheng Zhu, Zhongshi He, Yuanyuan Jia
3D dense convolutional neural network for fast and accurate single MR image super-resolution. Comput. Medical Imaging Graph. 93 (2021)
Yoganand Balagurunathan, Andrew Beers, Michael F. McNitt-Gray, Lubomir M. Hadjiiski, Sandy Napel, Dmitry B. Goldgof, Gustavo Pérez, Pablo Arbelaez, Alireza Mehrtash, Tina Kapur, Ehwa Yang, Jung Won Moon, Gabriel Bernardino Perez, Ricard Delgado-Gonzalo, Mohammad Mehdi Farhangi, Amir A. Amini, Renkun Ni, Xue Feng, Aditya Bagari, Kiran Vaidhya, Benjamin Veasey, Wiem Safta, Hichem Frigui, Joseph Enguehard, Ali Gholipour, Laura Silvana Castillo, Laura Alexandra Daza, Paul F. Pinsky, Jayashree Kalpathy-Cramer, Keyvan Farahani
Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge. IEEE Trans. Medical Imaging 40 (12) (2021)
Haoran Dou, Davood Karimi, Caitlin K. Rollins, Cynthia M. Ortinau, Lana Vasung, Clemente Velasco-Annis, Abdelhakim Ouaalam, Xin Yang, Dong Ni, Ali Gholipour
A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. IEEE Trans. Medical Imaging 40 (4) (2021)
Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield
Gradient-Guided Isotropic MRI Reconstruction From Anisotropic Acquisitions. IEEE Trans. Computational Imaging 7 (2021)
Davood Karimi, Lana Vasung, Fedel Machado-Rivas, Camilo Jaimes, Shadab Khan, Ali Gholipour
Accurate Parameter Estimation in Fetal Diffusion-Weighted MRI - Learning from Fetal and Newborn Data. MICCAI (7) (2021)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Simon K. Warfield, Ali Gholipour
Learning to estimate  the fiber orientation distribution function from diffusion-weighted MRI. NeuroImage 239 (2021)
Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
SLIMM: Slice localization integrated MRI monitoring. NeuroImage 223 (2020)
Davood Karimi, Ali Gholipour
Improving Calibration and Out-of-Distribution Detection in Medical Image Segmentation with Convolutional Neural Networks. CoRR (2020)
Davood Karimi, Jurriaan M. Peters, Abdelhakim Ouaalam, Sanjay P. Prabhu, Mustafa Sahin, Darcy A. Krueger, Alexander Kolevzon, Charis Eng, Simon K. Warfield, Ali Gholipour
Learning to Detect Brain Lesions from Noisy Annotations. ISBI (2020)
Haoran Dou, Davood Karimi, Caitlin K. Rollins, Cynthia M. Ortinau, Lana Vasung, Clemente Velasco-Annis, Abdelhakim Ouaalam, Xin Yang, Dong Ni, Ali Gholipour
A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. CoRR (2020)
Ayush Singh, Seyed Sadegh Mohseni Salehi, Ali Gholipour
Deep Predictive Motion Tracking in Magnetic Resonance Imaging: Application to Fetal Imaging. IEEE Trans. Medical Imaging 39 (11) (2020)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. CoRR (2020)
Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Medical Image Anal. 65 (2020)
Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. MICCAI (2) (2020)
Jinglong Du, Zhongshi He, Lulu Wang, Ali Gholipour, Zexun Zhou, Dingding Chen, Yuanyuan Jia
Super-resolution reconstruction of single anisotropic 3D MR images using residual convolutional neural network. Neurocomputing 392 (2020)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks. CoRR (2020)
Shadab Khan, Lana Vasung, Bahram Marami, Caitlin K. Rollins, Onur Afacan, Cynthia M. Ortinau, Edward Yang, Simon K. Warfield, Ali Gholipour
images. NeuroImage 185 (2019)
Joseph Enguehard, Peter O'Halloran, Ali Gholipour
Semi-Supervised Learning With Deep Embedded Clustering for Image Classification and Segmentation. IEEE Access 7 (2019)
Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access 7 (2019)
Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
Deep learning with noisy labels: exploring techniques and remedies in medical image analysis. CoRR (2019)
Seyed Sadegh Mohseni Salehi, Shadab Khan, Deniz Erdogmus, Ali Gholipour
Real-Time Deep Pose Estimation With Geodesic Loss for Image-to-Template Rigid Registration. IEEE Trans. Medical Imaging 38 (2) (2019)
Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Xavier Tomas-Fernandez, Sila Kurugol, Simon K. Warfield
Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans. Medical Imaging 38 (11) (2019)
Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield
Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. MICCAI (3) (2019)
Lulu Wang, Jinglong Du, Ali Gholipour, Zhongshi He, Yuanyuan Jia
Brain MRI Super-resolution Reconstruction using a Multi-level and Parallel Conv-Deconv Network. BIBM (2019)
Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation. MIDL (2019)
Ayush Singh, Seyed Sadegh Mohseni Salehi, Ali Gholipour
Deep Predictive Motion Tracking in Magnetic Resonance Imaging: Application to Fetal Imaging. CoRR (2019)
Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour
Real-time automatic fetal brain extraction in fetal MRI by deep learning. ISBI (2018)
Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Sila Kurugol, Simon K. Warfield
Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. DLMIA/ML-CDS@MICCAI (2018)
Seyed Sadegh Mohseni Salehi, Shadab Khan, Deniz Erdogmus, Ali Gholipour
Real-time Deep Registration With Geodesic Loss. CoRR (2018)
Jinglong Du, Lulu Wang, Ali Gholipour, Zhongshi He, Yuanyuan Jia
Accelerated Super-resolution MR Image Reconstruction via a 3D Densely Connected Deep Convolutional Neural Network. BIBM (2018)
Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets for IsoIntense Infant Brain MRI Segmentation. CoRR (2018)
Shadab Khan, Caitlin K. Rollins, Cynthia M. Ortinau, Onur Afacan, Simon K. Warfield, Ali Gholipour
Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. MICCAI (3) (2018)
Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour
Tversky as a Loss Function for Highly Unbalanced Image Segmentation using 3D Fully Convolutional Deep Networks. CoRR (2018)
Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour
Real-Time Automatic Fetal Brain Extraction in Fetal MRI by Deep Learning. CoRR (2017)
Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour
Tversky Loss Function for Image Segmentation Using 3D Fully Convolutional Deep Networks. MLMI@MICCAI (2017)
Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour
Auto-context Convolutional Neural Network for Geometry-Independent Brain Extraction in Magnetic Resonance Imaging. CoRR (2017)
Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour
Tversky loss function for image segmentation using 3D fully convolutional deep networks. CoRR (2017)
Sila Kurugol, Bahram Marami, Onur Afacan, Simon K. Warfield, Ali Gholipour
Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. CMMI/RAMBO/SWITCH@MICCAI (2017)
Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield, Meritxell Bach Cuadra, Ali Gholipour
Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage 155 (2017)
Yuanyuan Jia, Ali Gholipour, Zhongshi He, Simon K. Warfield
A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans. Medical Imaging 36 (5) (2017)
Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour
Auto-Context Convolutional Neural Network (Auto-Net) for Brain Extraction in Magnetic Resonance Imaging. IEEE Trans. Medical Imaging 36 (11) (2017)
Bahram Marami, Seyed Sadegh Mohseni Salehi, Onur Afacan, Benoit Scherrer, Caitlin K. Rollins, Edward Yang, Judy A. Estroff, Simon K. Warfield, Ali Gholipour
Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. NeuroImage 156 (2017)
Bahram Marami, Benoit Scherrer, Onur Afacan, Burak Erem, Simon K. Warfield, Ali Gholipour
Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans. Medical Imaging 35 (10) (2016)
Bahram Marami, Benoit Scherrer, Onur Afacan, Simon K. Warfield, Ali Gholipour
Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. MICCAI (3) (2016)
Yuanyuan Jia, Zhongshi He, Ali Gholipour, Simon K. Warfield
Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J. Biomed. Health Informatics 20 (6) (2016)
Benoit Scherrer, Onur Afacan, Maxime Taquet, Sanjay P. Prabhu, Ali Gholipour, Simon K. Warfield
Accelerated High Spatial Resolution Diffusion-Weighted Imaging. IPMI (2015)
Vahid Taimouri, Ali Gholipour, Clemente Velasco-Annis, Judy A. Estroff, Simon K. Warfield
A template-to-slice block matching approach for automatic localization of brain in fetal MRI. ISBI (2015)
Ali Gholipour, Catherine Limperopoulos, Sean Clancy, Cédric Clouchoux, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield
Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. MICCAI (2) (2014)
Siamak Yousefi, Nasser Kehtarnavaz, Ali Gholipour
Improved Labeling of Subcortical Brain Structures in Atlas-Based Segmentation of Magnetic Resonance Images. IEEE Trans. Biomed. Eng. 59 (7) (2012)
Benoit Scherrer, Ali Gholipour, Simon K. Warfield
Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Medical Image Anal. 16 (7) (2012)
Ali Gholipour, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield
Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. NeuroImage 60 (3) (2012)
Benoit Scherrer, Ali Gholipour, Simon K. Warfield
Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions. MMBIA (2012)
Ali Gholipour, Martin Polak, André J. W. van der Kouwe, Erez Nevo, Simon K. Warfield
Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. EMBC (2011)
Siamak Yousefi, Nasser Kehtarnavaz, Ali Gholipour
Synthesis of cervical tissue second harmonic generation images using Markov random field modeling. EMBC (2011)
Ali Gholipour, Nasser Kehtarnavaz, Benoit Scherrer, Simon K. Warfield
On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. EMBC (2011)
Ali Gholipour, Judy A. Estroff, Carol E. Barnewolt, Susan A. Connolly, Simon K. Warfield
Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int. J. Comput. Assist. Radiol. Surg. 6 (3) (2011)
Benoit Scherrer, Ali Gholipour, Simon K. Warfield
Super-Resolution in Diffusion-Weighted Imaging. MICCAI (2) (2011)
Ali Gholipour, Nasser Kehtarnavaz, Siamak Yousefi, Kaundinya S. Gopinath, Richard W. Briggs
Symmetric deformable image registration via optimization of information theoretic measures. Image Vis. Comput. 28 (6) (2010)
Ali Gholipour, Judy A. Estroff, Simon K. Warfield
Robust Super-Resolution Volume Reconstruction From Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans. Medical Imaging 29 (10) (2010)
Ali Gholipour, Judy A. Estroff, Mustafa Sahin, Sanjay P. Prabhu, Simon K. Warfield
Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. MICCAI (2) (2010)
Ali Gholipour, Nasser Kehtarnavaz, Richard W. Briggs, Kaundinya S. Gopinath, Wendy Ringe, Anthony Whittemore, Sergey Cheshkov, Khamid Bakhadirov
Validation of Non-Rigid Registration Between Functional and Anatomical Magnetic Resonance Brain Images. IEEE Trans. Biomed. Eng. 55 (2) (2008)
Ali Gholipour, Nasser Kehtarnavaz, Kaundinya S. Gopinath, Richard W. Briggs
Cross-Validation of Deformable Registration With Field Maps in Functional Magnetic Resonance Brain Imaging. IEEE J. Sel. Top. Signal Process. 2 (6) (2008)
Ali Gholipour, Nasser Kehtarnavaz
Computationally efficient mutual information estimation for non-rigid image registration. ICIP (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ali Gholipour