Davood Karimi

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 66

Top Topics

Histopathology Images

Convolutional Neural Networks

Computed Tomography

Top Venues

Medical Image Anal.

Int. J. Comput. Assist. Radiol. Surg.

Publications

Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR (2024)
Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
Anatomically Constrained Tractography of the Fetal Brain. CoRR (2024)
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Camilo Calixto, Zeljka Krsnik, Davood Karimi, Meritxell Bach Cuadra
Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study. Medical Image Anal. 95 (2024)
Davood Karimi
Diffusion MRI with Machine Learning. CoRR (2024)
Haykel Snoussi, Davood Karimi, Onur Afacan, Mustafa Utkur, Ali Gholipour
HAITCH: A Framework for Distortion and Motion Correction in Fetal Multi-Shell Diffusion-Weighted MRI. CoRR (2024)
Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi
Anatomically constrained tractography of the fetal brain. NeuroImage 297 (2024)
Yihan Wu, Ali Gholipour, Lana Vasung, Davood Karimi
A Computational Framework for Characterizing Normative Development of Structural Brain Connectivity in the Perinatal Stage. ISBI (2023)
Hamza Kebiri, Ali Gholipour, Meritxell Bach Cuadra, Davood Karimi
Direct segmentation of brain white matter tracts in diffusion MRI. CoRR (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Automatic brain pose estimation in fetal MRI. Medical Imaging: Image Processing (2023)
Davood Karimi, Caitlin K. Rollins, Clemente Velasco-Annis, Abdelhakim Ouaalam, Ali Gholipour
Learning to segment fetal brain tissue from noisy annotations. Medical Image Anal. 85 (2023)
Davood Karimi, Ali Gholipour
Improving Calibration and Out-of-Distribution Detection in Deep Models for Medical Image Segmentation. IEEE Trans. Artif. Intell. 4 (2) (2023)
Yihan Wu, Lana Vasung, Camilo Calixto, Ali Gholipour, Davood Karimi
Characterizing normal perinatal development of the human brain structural connectivity. CoRR (2023)
Davood Karimi, Hamza Kebiri, Ali Gholipour
TBSS++: A novel computational method for Tract-Based Spatial Statistics. CoRR (2023)
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Davood Karimi, Meritxell Bach Cuadra
Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning. MICCAI (7) (2023)
Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88 (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Fetal-BET: Brain Extraction Tool for Fetal MRI. CoRR (2023)
Rizhong Lin, Ali Gholipour, Jean-Philippe Thiran, Davood Karimi, Hamza Kebiri, Meritxell Bach Cuadra
Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains. CoRR (2023)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Deep Learning Framework for Real-time Fetal Brain Segmentation in MRI. CoRR (2022)
Arvind Balachandrasekaran, Davood Karimi, Camilo Jaimes, Ali Gholipour
Subject-specific quantitative susceptibility mapping using patch based deep image priors. CoRR (2022)
Davood Karimi, Ali Gholipour
Diffusion tensor estimation with transformer neural networks. Artif. Intell. Medicine 130 (2022)
Davood Karimi, Haoran Dou, Ali Gholipour
Medical Image Segmentation Using Transformer Networks. IEEE Access 10 (2022)
Davood Karimi, Ali Gholipour
Diffusion Tensor Estimation with Transformer Neural Networks. CoRR (2022)
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour
Deep Learning Framework for Real-Time Fetal Brain Segmentation in MRI. PIPPI@MICCAI (2022)
Davood Karimi, Caitlin K. Rollins, Clemente Velasco-Annis, Abdelhakim Ouaalam, Ali Gholipour
Learning to segment fetal brain tissue from noisy annotations. CoRR (2022)
Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage 257 (2022)
Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Fadida-Specktor, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR (2022)
Davood Karimi, Ali Gholipour
Atlas-Powered Deep Learning (ADL) - Application to Diffusion Weighted MRI. MICCAI (1) (2022)
Davood Karimi, Ali Gholipour
Atlas-powered deep learning (ADL) - application to diffusion weighted MRI. CoRR (2022)
Davood Karimi, Rabab K. Ward
Interpolation of CT Projections by Exploiting Their Self-Similarity and Smoothness. CoRR (2021)
Davood Karimi, Rabab Ward
Interpolation of CT Projections by Exploiting Their Self-Similarity and Smoothness. ICIP (2021)
Davood Karimi, Serge Vasylechko, Ali Gholipour
Convolution-Free Medical Image Segmentation Using Transformers. MICCAI (1) (2021)
Golnoosh Samei, Davood Karimi, Claudia Kesch, Septimiu Salcudean
Automatic Segmentation of the Prostate on 3D Trans-rectal Ultrasound Images using Statistical Shape Models and Convolutional Neural Networks. CoRR (2021)
Davood Karimi, Camilo Jaimes, Fedel Machado-Rivas, Lana Vasung, Shadab Khan, Simon K. Warfield, Ali Gholipour
Deep learning-based parameter estimation in fetal diffusion-weighted MRI. NeuroImage 243 (2021)
Davood Karimi, Serge Vasylechko, Ali Gholipour
Convolution-Free Medical Image Segmentation using Transformers. CoRR (2021)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif. Intell. Medicine 116 (2021)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Calibrated Diffusion Tensor Estimation. CoRR (2021)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Medical Image Anal. 72 (2021)
Haoran Dou, Davood Karimi, Caitlin K. Rollins, Cynthia M. Ortinau, Lana Vasung, Clemente Velasco-Annis, Abdelhakim Ouaalam, Xin Yang, Dong Ni, Ali Gholipour
A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. IEEE Trans. Medical Imaging 40 (4) (2021)
Davood Karimi, Lana Vasung, Fedel Machado-Rivas, Camilo Jaimes, Shadab Khan, Ali Gholipour
Accurate Parameter Estimation in Fetal Diffusion-Weighted MRI - Learning from Fetal and Newborn Data. MICCAI (7) (2021)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Simon K. Warfield, Ali Gholipour
Learning to estimate  the fiber orientation distribution function from diffusion-weighted MRI. NeuroImage 239 (2021)
Davood Karimi, Ali Gholipour
Improving Calibration and Out-of-Distribution Detection in Medical Image Segmentation with Convolutional Neural Networks. CoRR (2020)
Davood Karimi, Jurriaan M. Peters, Abdelhakim Ouaalam, Sanjay P. Prabhu, Mustafa Sahin, Darcy A. Krueger, Alexander Kolevzon, Charis Eng, Simon K. Warfield, Ali Gholipour
Learning to Detect Brain Lesions from Noisy Annotations. ISBI (2020)
Davood Karimi, Septimiu E. Salcudean
Reducing the Hausdorff Distance in Medical Image Segmentation With Convolutional Neural Networks. IEEE Trans. Medical Imaging 39 (2) (2020)
Haoran Dou, Davood Karimi, Caitlin K. Rollins, Cynthia M. Ortinau, Lana Vasung, Clemente Velasco-Annis, Abdelhakim Ouaalam, Xin Yang, Dong Ni, Ali Gholipour
A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. CoRR (2020)
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. CoRR (2020)
Davood Karimi, Guy Nir, Ladan Fazli, Peter C. Black, Larry Goldenberg, Septimiu E. Salcudean
Deep Learning-Based Gleason Grading of Prostate Cancer From Histopathology Images - Role of Multiscale Decision Aggregation and Data Augmentation. IEEE J. Biomed. Health Informatics 24 (5) (2020)
Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Medical Image Anal. 65 (2020)
Davood Karimi, Simon K. Warfield, Ali Gholipour
Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks. CoRR (2020)
Davood Karimi, Qi Zeng, Prateek Mathur, Apeksha Avinash, Sara Mahdavi, Ingrid Spadinger, Purang Abolmaesumi, Septimiu E. Salcudean
Accurate and robust deep learning-based segmentation of the prostate clinical target volume in ultrasound images. Medical Image Anal. 57 (2019)
Qi Zeng, Davood Karimi, Emily H. T. Pang, Shahed K. Mohammed, Caitlin Schneider, Mohammad Honarvar, Septimiu E. Salcudean
Liver Segmentation in Magnetic Resonance Imaging via Mean Shape Fitting with Fully Convolutional Neural Networks. MICCAI (2) (2019)
Davood Karimi, Septimiu E. Salcudean
Reducing the Hausdorff Distance in Medical Image Segmentation with Convolutional Neural Networks. CoRR (2019)
Davood Karimi
Sparse and redundant signal representations for x-ray computed tomography. CoRR (2019)
Davood Karimi, Golnoosh Samei, Yanan Shao, Tim Salcudean
A deep learning-based method for prostate segmentation in T2-weighted magnetic resonance imaging. CoRR (2019)
Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour
Deep learning with noisy labels: exploring techniques and remedies in medical image analysis. CoRR (2019)
Davood Karimi, Golnoosh Samei, Claudia Kesch, Guy Nir, Septimiu E. Salcudean
Prostate segmentation in MRI using a convolutional neural network architecture and training strategy based on statistical shape models. Int. J. Comput. Assist. Radiol. Surg. 13 (8) (2018)
Davood Karimi, Qi Zeng, Prateek Mathur, Apeksha Avinash, Sara Mahdavi, Ingrid Spadinger, Purang Abolmaesumi, Septimiu Salcudean
Accurate and Robust Segmentation of the Clinical Target Volume for Prostate Brachytherapy. MICCAI (4) (2018)
Qi Zeng, Golnoosh Samei, Davood Karimi, Claudia Kesch, Seyedeh Sara Mahdavi, Purang Abolmaesumi, Septimiu E. Salcudean
Prostate segmentation in transrectal ultrasound using magnetic resonance imaging priors. Int. J. Comput. Assist. Radiol. Surg. 13 (6) (2018)
Guy Nir, Soheil Hor, Davood Karimi, Ladan Fazli, Brian F. Skinnider, Peyman Tavassoli, Dmitry Turbin, Carlos F. Villamil, Gang Wang, R. Storey Wilson, Kenneth A. Iczkowski, M. Scott Lucia, Peter C. Black, Purang Abolmaesumi, S. Larry Goldenberg, Septimiu E. Salcudean
Automatic grading of prostate cancer in digitized histopathology images: Learning from multiple experts. Medical Image Anal. 50 (2018)
Davood Karimi, Dan Ruan
Synergistic Combination of Learned and Hand-Crafted Features for Prostate Lesion Classification in Multiparametric Magnetic Resonance Imaging. MICCAI (3) (2017)
Davood Karimi, Rabab K. Ward
Image reconstruction in computed tomography using variance-reduced stochastic gradient descent. ISBI (2017)
Davood Karimi, Rabab K. Ward
A denoising algorithm for projection measurements in cone-beam computed tomography. Comput. Biol. Medicine 69 (2016)
Davood Karimi, Rabab K. Ward
Patch-based models and algorithms for image processing: a review of the basic principles and methods, and their application in computed tomography. Int. J. Comput. Assist. Radiol. Surg. 11 (10) (2016)
Davood Karimi, Rabab K. Ward
Sinogram smoothing and interpolation via alternating projections onto the slope and curvature constraints. Medical Imaging: Image Processing (2016)
Davood Karimi, Rabab K. Ward
A novel structured dictionary for fast processing of 3D medical images, with application to computed tomography restoration and denoising. Medical Imaging: Image Processing (2016)
Davood Karimi, Pierre Deman, Rabab K. Ward, Nancy Ford
A sinogram denoising algorithm for low-dose computed tomography. BMC Medical Imaging 16 (2016)
Davood Karimi, Rabab K. Ward
On the computational implementation of forward and back-projection operations for cone-beam computed tomography. Medical Biol. Eng. Comput. 54 (8) (2016)
Davood Karimi, Rabab K. Ward, Nancy Ford
Angular upsampling of projection measurements in 3D computed tomography using a sparsity prior. ICIP (2015)
Cameron A. MacGregor, Davood Karimi, Ali Azarbarzin, Zahra Moussavi
Statistical analysis of tracheal breath sounds during wakefulness for screening obstructive sleep apnea. EMBC (2013)
Ehsan Shams, Davood Karimi, Zahra Moussavi
Bispectral analysis of tracheal breath sounds for Obstructive Sleep Apnea. EMBC (2012)