Amber L. Simpson

ORCID

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 33

Top Venues

Medical Imaging: Image-Guided Procedures

CoRR

Medical Imaging: Computer-Aided Diagnosis

Int. J. Comput. Assist. Radiol. Surg.

Queen's University at Kingston, Ontario, Canada (PHD)

Education History

Queen's University at Kingston, Ontario, Canada

PHD

Publications

Ramtin Mojtahedi, Mohammad Hamghalam, Richard K. G. Do, Amber L. Simpson
Towards Optimal Patch Size in Vision Transformers for Tumor Segmentation. CoRR (2023)
Jacob J. Peoples, Mohammad Hamghalam, Imani James, Maida Wasim, Natalie Gangai, HyunSeon Christine Kang, Xiujiang John Rong, Yun Shin Chun, Richard K. G. Do, Amber L. Simpson
Examining the Effects of Slice Thickness on the Reproducibility of CT Radiomics for Patients with Colorectal Liver Metastases. UNSURE@MICCAI (2023)
Maede Ashofteh Barabadi, Xiao-Dan Zhu, Wai-Yip Chan, Amber L. Simpson, Richard K. G. Do
Parameter-Efficient Methods for Metastases Detection from Clinical Notes. CoRR (2023)
Maede Ashofteh Barabadi, Xiaodan Zhu, Wai-Yip Chan, Amber L. Simpson, Richard K. G. Do
Parameter-Efficient Methods for Metastases Detection fromClinical Notes. Canadian AI (2023)
Mohammad Hamghalam, Richard K. G. Do, Amber L. Simpson
Attention-based CT Scan Interpolation for Lesion Segmentation of Colorectal Liver Metastases. CoRR (2023)
Abhishek Midya, Jayasree Chakraborty, Rami Srouji, Raja R. Narayan, Thomas Börner, Jian Zheng, Linda M. Pak, John M. Creasy, Luz A. Escobar, Kate A. Harrington, Mithat Gönen, Michael I. D'Angelica, T. Peter Kingham, Richard K. G. Do, William R. Jarnagin, Amber L. Simpson
Computerized Diagnosis of Liver Tumors From CT Scans Using a Deep Neural Network Approach. IEEE J. Biomed. Health Informatics 27 (5) (2023)
Ramtin Mojtahedi, Mohammad Hamghalam, William R. Jarnagin, Richard K. G. Do, Amber L. Simpson
Leveraging Contrastive Learning with SimSiam for the Classification of Primary and Secondary Liver Cancers. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI (2023)
Ramtin Mojtahedi, Mohammad Hamghalam, Amber L. Simpson
Multi-modal Brain Tumour Segmentation Using Transformer with Optimal Patch Size. BrainLes@MICCAI (2022)
Karen E. Batch, Jianwei Yue, Alex Darcovich, Kaelan Lupton, Corinne C. Liu, David P. Woodlock, Mohammad Ali K. El Amine, Pamela I. Causa-Andrieu, Lior Gazit, Gary H. Nguyen, Farhana H. Zulkernine, Richard K. G. Do, Amber L. Simpson
Developing a Cancer Digital Twin: Supervised Metastases Detection From Consecutive Structured Radiology Reports. Frontiers Artif. Intell. 5 (2022)
Ramtin Mojtahedi, Mohammad Hamghalam, Richard K. G. Do, Amber L. Simpson
Towards Optimal Patch Size in Vision Transformers for Tumor Segmentation. MMMI@MICCAI (2022)
Mohammad Hamghalam, Alejandro F. Frangi, Baiying Lei, Amber L. Simpson
Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-Modal Glioma Segmentation. CoRR (2021)
Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbelaez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso
The Medical Segmentation Decathlon. CoRR (2021)
Mohammad Hamghalam, Alejandro F. Frangi, Baiying Lei, Amber L. Simpson
Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-modal Glioma Segmentation. MICCAI (7) (2021)
Travis L. Williams, Kate A. Harrington, Sharon A. Lawrence, Jayasree Chakraborty, Mohammad A. Al Efishat, Marc A. Attiyeh, Gokce Askan, Yuting Chou, Alessandra Pulvirenti, Caitlin A. McIntyre, Mithat Gonen, Olca Basturk, Vinod P. Balachandran, T. Peter Kingham, Michael I. D'Angelica, William R. Jarnagin, Jeffrey A. Drebin, Richard K. G. Do, Peter J. Allen, Amber L. Simpson
A combined radiomics and cyst fluid inflammatory markers model to predict preoperative risk in pancreatic cystic lesions. Medical Imaging: Image-Guided Procedures (2020)
Hassan Muhammad, Carlie S. Sigel, Gabriele Campanella, Thomas Börner, Linda M. Pak, Stefan Büttner, Jan N. M. IJzermans, Bas Groot Koerkamp, Michael Doukas, William R. Jarnagin, Amber L. Simpson, Thomas J. Fuchs
Unsupervised Subtyping of Cholangiocarcinoma Using a Deep Clustering Convolutional Autoencoder. MICCAI (1) (2019)
Hassan Muhammad, Carlie S. Sigel, Gabriele Campanella, Thomas Börner, Linda M. Pak, Stefan Büttner, Jan N. M. IJzermans, Bas Groot Koerkamp, Michael Doukas, William R. Jarnagin, Amber L. Simpson, Thomas J. Fuchs
Towards Unsupervised Cancer Subtyping: Predicting Prognosis Using A Histologic Visual Dictionary. CoRR (2019)
Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan Heckers, William R. Jarnagin, Maureen McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso
A large annotated medical image dataset for the development and evaluation of segmentation algorithms. CoRR (2019)
Abhishek Midya, Jayasree Chakraborty, Linda M. Pak, Jian Zheng, William R. Jarnagin, Richard K. G. Do, Amber L. Simpson
Deep convolutional neural network for the classification of hepatocellular carcinoma and intrahepatic cholangiocarcinoma. Medical Imaging: Computer-Aided Diagnosis (2018)
Jon S. Heiselman, Jarrod A. Collins, Logan W. Clements, Jared A. Weis, Amber L. Simpson, Sunil K. Geevarghese, T. Peter Kingham, William R. Jarnagin, Michael I. Miga
Technical note: Nonrigid registration for laparoscopic liver surgery using sparse intraoperative data. Medical Imaging: Image-Guided Procedures (2018)
Jayasree Chakraborty, Alessandra Pulvirenti, Rikiya Yamashita, Abhishek Midya, Mithat Gönen, David S. Klimstra, Diane L. Reidy, Peter J. Allen, Richard K. G. Do, Amber L. Simpson
Quantitative CT analysis for the preoperative prediction of pathologic grade in pancreatic neuroendocrine tumors. Medical Imaging: Computer-Aided Diagnosis (2018)
Jayasree Chakraborty, Jian Zheng, Mithat Gönen, William R. Jarnagin, Ronald P. DeMatteo, Richard K. G. Do, Amber L. Simpson
Preoperative assessment of microvascular invasion in hepatocellular carcinoma. Medical Imaging: Computer-Aided Diagnosis (2017)
Jon S. Heiselman, Jarrod A. Collins, Logan W. Clements, Jared A. Weis, Amber L. Simpson, Sunil K. Geevarghese, William R. Jarnagin, Michael I. Miga
Emulation of the laparoscopic environment for image-guided liver surgery via an abdominal phantom system with anatomical ligamenture. Medical Imaging: Image-Guided Procedures (2017)
Jarrod A. Collins, Jared A. Weis, Jon S. Heiselman, Logan W. Clements, Amber L. Simpson, William R. Jarnagin, Michael I. Miga
Improving Registration Robustness for Image-Guided Liver Surgery in a Novel Human-to-Phantom Data Framework. IEEE Trans. Medical Imaging 36 (7) (2017)
Burton Ma, T. Peter Kingham, Michael I. Miga, William R. Jarnagin, Amber L. Simpson
Liver segmentation in color images. Medical Imaging: Image-Guided Procedures (2017)
Jarrod A. Collins, Jon S. Heiselman, Jared A. Weis, Logan W. Clements, Amber L. Simpson, William R. Jarnagin, Michael I. Miga
On the nature of data collection for soft-tissue image-to-physical organ registration: a noise characterization study. Medical Imaging: Image-Guided Procedures (2017)
Lior Gazit, Jayasree Chakraborty, Marc A. Attiyeh, Liana Langdon-Embry, Peter J. Allen, Richard K. G. Do, Amber L. Simpson
Quantification of CT images for the classification of high- and low-risk pancreatic cysts. Medical Imaging: Computer-Aided Diagnosis (2017)
William R. Jarnagin, Amber L. Simpson, Michael I. Miga
Toward integrated image guided liver surgery. Medical Imaging: Image-Guided Procedures (2017)
Burton Ma, Niloofar Banihaveb, Joy Choi, Elvis C. S. Chen, Amber L. Simpson
Is pose-based pivot calibration superior to sphere fitting? Medical Imaging: Image-Guided Procedures (2017)
Jayasree Chakraborty, Liana Langdon-Embry, Joanna G. Escalon, Peter J. Allen, Maeve A. Lowery, Eileen M. O'Reilly, Richard K. G. Do, Amber L. Simpson
Texture analysis for survival prediction of pancreatic ductal adenocarcinoma patients with neoadjuvant chemotherapy. Medical Imaging: Image Processing (2016)
Rowena E. Ong, Courtenay L. Glisson, Jessica Burgner-Kahrs, Amber L. Simpson, Andrei Danilchenko, Ray A. Lathrop, S. Duke Herrell, Robert J. Webster, Michael I. Miga, Robert L. Galloway
A novel method for texture-mapping conoscopic surfaces for minimally invasive image-guided kidney surgery. Int. J. Comput. Assist. Radiol. Surg. 11 (8) (2016)
Michael I. Miga, Kay Sun, Ishita Chen, Logan W. Clements, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson
Clinical evaluation of a model-updated image-guidance approach to brain shift compensation: experience in 16 cases. Int. J. Comput. Assist. Radiol. Surg. 11 (8) (2016)
Logan W. Clements, Jarrod A. Collins, Yifei Wu, Amber L. Simpson, William R. Jarnagin, Michael I. Miga
Validation of model-based deformation correction in image-guided liver surgery via tracked intraoperative ultrasound: preliminary method and results. Medical Imaging: Image-Guided Procedures (2015)
Universe Leung, Amber L. Simpson, Lauryn B. Adams, William R. Jarnagin, Michael I. Miga, T. Peter Kingham
Image guidance improves localization of sonographically occult colorectal liver metastases. Medical Imaging: Image-Guided Procedures (2015)
Yifei Wu, D. Caleb Rucker, Rebekah H. Conley, Thomas S. Pheiffer, Amber L. Simpson, Sunil K. Geevarghese, Michael I. Miga
Registration of liver images to minimally invasive intraoperative surface and subsurface data. Medical Imaging: Image-Guided Procedures (2014)
Amber L. Simpson, Kay Sun, Thomas S. Pheiffer, D. Caleb Rucker, Allen K. Sills, Reid Carleton Thompson, Michael I. Miga
Evaluation of Conoscopic Holography for Estimating Tumor Resection Cavities in Model-Based Image-Guided Neurosurgery. IEEE Trans. Biomed. Eng. 61 (6) (2014)
Amber L. Simpson, Richard K. G. Do, E. Patricia Parada, Michael I. Miga, William R. Jarnagin
Texture feature analysis for prediction of postoperative liver failure prior to surgery. Medical Imaging: Image Processing (2014)
D. Caleb Rucker, Yifei Wu, Logan W. Clements, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, William R. Jarnagin, Michael I. Miga
A Mechanics-Based Nonrigid Registration Method for Liver Surgery Using Sparse Intraoperative Data. IEEE Trans. Medical Imaging 33 (1) (2014)
Thomas S. Pheiffer, Amber L. Simpson, Janet E. Ondrake, Michael I. Miga
Geometric reconstruction using tracked ultrasound strain imaging. Medical Imaging: Image-Guided Procedures (2013)
Ankur N. Kumar, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson, Michael I. Miga, Benoit M. Dawant
Phantom-based comparison of the accuracy of point clouds extracted from stereo cameras and laser range scanner. Medical Imaging: Image-Guided Procedures (2013)
Amber L. Simpson, Jessica Burgner, Courtenay L. Glisson, S. Duke Herrell, Burton Ma, Thomas S. Pheiffer, Robert J. Webster III, Michael I. Miga
Comparison Study of Intraoperative Surface Acquisition Methods for Surgical Navigation. IEEE Trans. Biomed. Eng. 60 (4) (2013)
Amber L. Simpson, Neal P. Dillon, Michael I. Miga, Burton Ma
A framework for measuring TRE at the tip of an optically tracked pointing stylus. Medical Imaging: Image-Guided Procedures (2013)
Ishita Chen, Rowena E. Ong, Amber L. Simpson, Kay Sun, Reid Carleton Thompson, Michael I. Miga
Integrating Retraction Modeling Into an Atlas-Based Framework for Brain Shift Prediction. IEEE Trans. Biomed. Eng. 60 (12) (2013)
D. Caleb Rucker, Yifei Wu, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Michael I. Miga
Nonrigid liver registration for image-guided surgery using partial surface data: a novel iterative approach. Medical Imaging: Image-Guided Procedures (2013)
Ishita Chen, Amber L. Simpson, Kay Sun, Reid Carleton Thompson, Michael I. Miga
Sensitivity analysis and automation for intraoperative implementation of the atlas-based method for brain shift correction. Medical Imaging: Image-Guided Procedures (2013)
Michael J. Shannon, Ingrid M. Meszoely, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Kay Sun, Michael I. Miga
Initial study of breast tissue retraction toward image guided breast surgery. Medical Imaging: Image-Guided Procedures (2012)
Amber L. Simpson, Jessica Burgner, Ishita Chen, Thomas S. Pheiffer, Kay Sun, Reid Carleton Thompson, Robert J. Webster, Michael I. Miga
Intraoperative brain tumor resection cavity characterization with conoscopic holography. Medical Imaging: Image-Guided Procedures (2012)
Kristen E. Miller, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Michael I. Miga
Utilizing ultrasound as a surface digitization tool in image guided liver surgery. Medical Imaging: Image-Guided Procedures (2012)
Philip J. Swaney, Jessica Burgner, Thomas S. Pheiffer, D. Caleb Rucker, Hunter B. Gilbert, Janet E. Ondrake, Amber L. Simpson, Everette Clif Burdette, Michael I. Miga, Robert J. Webster
Tracked 3D ultrasound targeting with an active cannula. Medical Imaging: Image-Guided Procedures (2012)
Thomas S. Pheiffer, Brian Lennon, Amber L. Simpson, Michael I. Miga
Development of a novel laser range scanner. Medical Imaging: Image-Guided Procedures (2011)
Courtenay L. Glisson, Rowena E. Ong, Amber L. Simpson, Peter Clark, S. Duke Herrell, Robert L. Galloway
The use of virtual fiducials in image-guided kidney surgery. Medical Imaging: Image-Guided Procedures (2011)
Amber L. Simpson, Burton Ma, Randy E. Ellis, A. James Stewart, Michael I. Miga
Uncertainty propagation and analysis of image-guided surgery. Medical Imaging: Image-Guided Procedures (2011)
Michael I. Miga, Prashanth Dumpuri, Amber L. Simpson, Jared A. Weis, William R. Jarnagin
The sparse data extrapolation problem: strategies for soft-tissue correction for image-guided liver surgery. Medical Imaging: Image-Guided Procedures (2011)
Siyi Ding, Michael I. Miga, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson, Benoit M. Dawant
Tracking of Vessels in Intra-Operative Microscope Video Sequences for Cortical Displacement Estimation. IEEE Trans. Biomed. Eng. 58 (7) (2011)
Burton Ma, Amber L. Simpson, Randy E. Ellis
Proof of Concept of a Simple Computer-Assisted Technique for Correcting Bone Deformities. MICCAI (2) (2007)
Amber L. Simpson, Burton Ma, Elvis C. S. Chen, Randy E. Ellis, A. James Stewart
Using Registration Uncertainty Visualization in a User Study of a Simple Surgical Task. MICCAI (2) (2006)
Amber L. Simpson, Burton Ma, Dan P. Borschneck, Randy E. Ellis
Computer-Assisted Deformity Correction Using the Ilizarov Method. MICCAI (2005)

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Publication Activity (10 Years)

Top Topics

Top Venues

Amber L. Simpson