Olaf Ronneberger

Publication Activity (10 Years)

Years Active: 2002-2021
Publications (10 Years): 23

Top Venues

CoRR

ISBI

Int. J. Comput. Vis.

Medical Image Anal.

University of Freiburg, Freiburg im Breisgau, Germany (PHD)

Education History

University of Freiburg, Freiburg im Breisgau, Germany

PHD

Publications

Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbelaez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso
The Medical Segmentation Decathlon. CoRR (2021)
Dan Rosenbaum, Marta Garnelo, Michal Zielinski, Charlie Beattie, Ellen Clancy, Andrea Huber, Pushmeet Kohli, Andrew W. Senior, John Jumper, Carl Doersch, S. M. Ali Eslami, Olaf Ronneberger, Jonas Adler
Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs. CoRR (2021)
Jim Winkens, Rudy Bunel, Abhijit Guha Roy, Robert Stanforth, Vivek Natarajan, Joseph R. Ledsam, Patricia MacWilliams, Pushmeet Kohli, Alan Karthikesalingam, Simon Kohl, A. Taylan Cemgil, S. M. Ali Eslami, Olaf Ronneberger
Contrastive Training for Improved Out-of-Distribution Detection. CoRR (2020)
Simon A. A. Kohl, Bernardino Romera-Paredes, Klaus H. Maier-Hein, Danilo Jimenez Rezende, S. M. Ali Eslami, Pushmeet Kohli, Andrew Zisserman, Olaf Ronneberger
A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities. CoRR (2019)
Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan Heckers, William R. Jarnagin, Maureen McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso
A large annotated medical image dataset for the development and evaluation of segmentation algorithms. CoRR (2019)
Anton Böhm, Annekathrin Ucker, Tim Jager, Olaf Ronneberger, Thorsten Falk
ISOODL: Instance segmentation of overlapping biological objects using deep learning. ISBI (2018)
Stanislav Nikolov, Sam Blackwell, Ruheena Mendes, Jeffrey De Fauw, Clemens Meyer, Cían Hughes, Harry Askham, Bernardino Romera-Paredes, Alan Karthikesalingam, Carlton Chu, Dawn Carnell, Cheng Boon, Derek D'Souza, Syed Ali Moinuddin, Kevin Sullivan, DeepMind Radiographer Consortium, Hugh Montgomery, Geraint Rees, Ricky Sharma, Mustafa Suleyman, Trevor Back, Joseph R. Ledsam, Olaf Ronneberger
Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy. CoRR (2018)
Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger
A Probabilistic U-Net for Segmentation of Ambiguous Images. CoRR (2018)
Simon Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger
A Probabilistic U-Net for Segmentation of Ambiguous Images. NeurIPS (2018)
Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
Gland segmentation in colon histology images: The glas challenge contest. Medical Image Anal. 35 (2017)
Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. Int. J. Comput. Vis. 122 (3) (2017)
Olaf Ronneberger
Invited Talk: U-Net Convolutional Networks for Biomedical Image Segmentation. Bildverarbeitung für die Medizin (2017)
Özgün Çiçek, Ahmed Abdulkadir, Soeren S. Lienkamp, Thomas Brox, Olaf Ronneberger
3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation. MICCAI (2) (2016)
Jeffrey De Fauw, Pearse A. Keane, Nenad Tomasev, Daniel Visentin, George van den Driessche, Mike Johnson, Cían Hughes, Carlton Chu, Joseph R. Ledsam, Trevor Back, Tunde Peto, Geraint Rees, Hugh Montgomery, Rosalind Raine, Olaf Ronneberger, Julien Cornebise
Automated analysis of retinal imaging using machine learning techniques for computer vision. F1000Research 5 (2016)
Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
Gland Segmentation in Colon Histology Images: The GlaS Challenge Contest. CoRR (2016)
Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaz Vrtovec, Olaf Ronneberger, Philipp Fischer, Timothy F. Cootes, Claudia Lindner
A benchmark for comparison of dental radiography analysis algorithms. Medical Image Anal. 31 (2016)
Özgün Çiçek, Ahmed Abdulkadir, Soeren S. Lienkamp, Thomas Brox, Olaf Ronneberger
3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation. CoRR (2016)
Carlton Chu, Jeffrey De Fauw, Nenad Tomasev, Bernardino Romera-Paredes, Cían Hughes, Joseph R. Ledsam, Trevor Back, Hugh Montgomery, Geraint Rees, Rosalind Raine, Kevin Sullivan, Syed Ali Moinuddin, Derek D'Souza, Olaf Ronneberger, Ruheena Mendes, Julien Cornebise
Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans. F1000Research 5 (2016)
Olaf Ronneberger, Philipp Fischer, Thomas Brox
U-Net: Convolutional Networks for Biomedical Image Segmentation. CoRR (2015)
Esther E. Bron, Marion Smits, Wiesje M. van der Flier, Hugo Vrenken, Frederik Barkhof, Philip Scheltens, Janne M. Papma, Rebecca M. E. Steketee, Carolina Méndez Orellana, Rozanna Meijboom, Madalena Pinto, Joana R. Meireles, Carolina Garrett, António J. Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, Nicola Amoroso, Roberto Bellotti, David Cárdenas-Peña, Andrés Marino Álvarez-Meza, Chester V. Dolph, Khan M. Iftekharuddin, Simon F. Eskildsen, Pierrick Coupé, Vladimir S. Fonov, Katja Franke
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge. NeuroImage 111 (2015)
Robert Bensch, Olaf Ronneberger
Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs. ISBI (2015)
Olaf Ronneberger, Philipp Fischer, Thomas Brox
U-Net: Convolutional Networks for Biomedical Image Segmentation. MICCAI (3) (2015)
Robert Bensch, Thomas Brox, Olaf Ronneberger
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. BMVC (2015)
Ahmed Abdulkadir, Olaf Ronneberger, Sarah J. Tabrizi, Stefan Klöppel
Reduction of confounding effects with voxel-wise Gaussian process regression in structural MRI. PRNI (2014)
Dominic Mai, Jasmin Dürr, Klaus Palme, Olaf Ronneberger
Accurate Detection in Volumetric Images Using Elastic Registration Based Validation. GCPR (2014)
Dominic Mai, Olaf Ronneberger
Improving Detection of Deformable Objects in Volumetric Data. BMVC (2014)
Daniel Kostro, Ahmed Abdulkadir, Alexandra Durr, Raymund Roos, Blair R. Leavitt, Hans J. Johnson, David M. Cash, Sarah J. Tabrizi, Rachael I. Scahill, Olaf Ronneberger, Stefan Klöppel
Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. NeuroImage 98 (2014)
Kun Liu, Soeren S. Lienkamp, Asako Shindo, John B. Wallingford, Gerd Walz, Olaf Ronneberger
Optical flow guided cell segmentation and tracking in developing tissue. ISBI (2014)
Kun Liu, Henrik Skibbe, Thorsten Schmidt, Thomas Blein, Klaus Palme, Thomas Brox, Olaf Ronneberger
Rotation-Invariant HOG Descriptors Using Fourier Analysis in Polar and Spherical Coordinates. Int. J. Comput. Vis. 106 (3) (2014)
Margret Keuper, Thorsten Schmidt, Maja Temerinac-Ott, Jan Padeken, Patrick Heun, Olaf Ronneberger, Thomas Brox
Blind Deconvolution of Widefield Fluorescence Microscopic Data by Regularization of the Optical Transfer Function (OTF). CVPR (2013)
Dominic Mai, Philipp Fischer, Thomas Blein, Jasmin Dürr, Klaus Palme, Thomas Brox, Olaf Ronneberger
Discriminative Detection and Alignment in Volumetric Data. GCPR (2013)
Kun Liu, Thorsten Schmidt, Thomas Blein, Jasmin Dürr, Klaus Palme, Olaf Ronneberger
Joint 3D cell segmentation and classification in the Arabidopsis root using energy minimization and shape priors. ISBI (2013)
Thorsten Schmidt, Jasmin Dürr, Margret Keuper, Thomas Blein, Klaus Palme, Olaf Ronneberger
Variational attenuation correction of two-view confocal microscopic recordings. ISBI (2013)
Thorsten Schmidt, Jasmin Dürr, Margret Keuper, Thomas Blein, Klaus Palme, Olaf Ronneberger
Variational attenuation correction in two-view confocal microscopy. BMC Bioinform. 14 (2013)
Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, Wolfgang Driever, Thomas Brox, Hans Burkhardt
Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy. IEEE Trans. Image Process. 21 (4) (2012)
Henrik Skibbe, Marco Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt
Fast Rotation Invariant 3D Feature Computation Utilizing Efficient Local Neighborhood Operators. IEEE Trans. Pattern Anal. Mach. Intell. 34 (8) (2012)
Thorsten Schmidt, Margret Keuper, Taras Pasternak, Klaus Palme, Olaf Ronneberger
Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves. DAGM/OAGM Symposium (2012)
Margret Keuper, Maja Temerinac-Ott, Jan Padeken, Patrick Heun, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
Blind deconvolution with PSF regularization for wide-field microscopy. ISBI (2012)
Kun Liu, Qing Wang, Wolfgang Driever, Olaf Ronneberger
2D/3D rotation-invariant detection using equivariant filters and kernel weighted mapping. CVPR (2012)
Lingyu Ma, Marco Reisert, Christophe Wirth, Carola Hunte, Olaf Ronneberger, Hans Burkhardt
Alpha helix prediction based on Metropolis-Hastings sampling. ISBI (2011)
Stefan Klöppel, Ahmed Abdulkadir, Stathis Hadjidemetriou, Sabine Issleib, Lars Frings, Thao Nguyen Thanh, Irina Mader, Stefan J. Teipel, Michael Hüll, Olaf Ronneberger
A comparison of different automated methods for the detection of white matter lesions in MRI data. NeuroImage 57 (2) (2011)
Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
Spherical Bessel Filter for 3D object detection. ISBI (2011)
Margret Keuper, Thorsten Schmidt, Marta Rodriguez-Franco, Wolfgang Schamel, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
Hierarchical Markov Random Fields for mast cell segmentation in electron microscopic recordings. ISBI (2011)
Kun Liu, Henrik Skibbe, Thorsten Schmidt, Thomas Blein, Klaus Palme, Olaf Ronneberger
3D Rotation-Invariant Description from Tensor Operation on Spherical HOG Field. BMVC (2011)
Maja Temerinac-Ott, Olaf Ronneberger, Roland Nitschke, Wolfgang Driever, Hans Burkhardt
Spatially-variant Lucy-Richardson deconvolution for multiview fusion of microscopical 3D images. ISBI (2011)
Olaf Ronneberger
Reusable modules for high-content 3D and 4D image analysis. ISBI (2011)
Matthias Schlachter, Marco Reisert, Corinna Herz, Fabienne Schlurmann, Silke Lassmann, Martin Werner, Hans Burkhardt, Olaf Ronneberger
Harmonic Filters for 3D Multichannel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer. IEEE Trans. Medical Imaging 29 (8) (2010)
Henrik Skibbe, Marco Reisert, Thorsten Schmidt, Klaus Palme, Olaf Ronneberger, Hans Burkhardt
3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation. DAGM-Symposium (2010)
Margret Keuper, Hans Burkhardt, Olaf Ronneberger, Jan Padeken, Patrick Heun
Mean Shift Gradient Vector Flow: A Robust External Force Field for 3D Active Surfaces. ICPR (2010)
Margret Keuper, Robert Bensch, Karsten Voigt, Alexander Dovzhenko, Klaus Palme, Hans Burkhardt, Olaf Ronneberger
Semi-supervised Learning of Edge Filters for Volumetric Image Segmentation. DAGM-Symposium (2010)
Margret Keuper, Thorsten Schmidt, Jan Padeken, Patrick Heun, Klaus Palme, Hans Burkhardt, Olaf Ronneberger
3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes. ICPR (2010)
Margret Keuper, Jan Padeken, Patrick Heun, Hans Burkhardt, Olaf Ronneberger
Schneider Cell Nuclei and Nucleoli. ISVC (1) (2009)
Qing Wang, Olaf Ronneberger, Hans Burkhardt
Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates. IEEE Trans. Pattern Anal. Mach. Intell. 31 (9) (2009)
Robert Bensch, Olaf Ronneberger, Bettina Greese, Christian Fleck, Katja Wester, Martin Hülskamp, Hans Burkhardt
Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets. ISBI (2009)
Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics. DAGM-Symposium (2009)
Qing Wang, Olaf Ronneberger, Ekkehard Schulze, Ralf Baumeister, Hans Burkhardt
Using Lateral Coupled Snakes for Modeling the Contours of Worms. DAGM-Symposium (2009)
Henrik Skibbe, Qing Wang, Olaf Ronneberger, Hans Burkhardt, Marco Reisert
Fast computation of 3D spherical Fourier harmonic descriptors - a complete orthonormal basis for a rotational invariant representation of three-dimensional objects. ICCV Workshops (2009)
Olaf Ronneberger, Qing Wang, Hans Burkhardt
Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy. ISBI (2008)
Marco Reisert, Olaf Ronneberger, Hans Burkhardt
A Fast and Reliable Coin Recognition System. DAGM-Symposium (2007)
Marco Reisert, Olaf Ronneberger, Hans Burkhardt
Holomorphic Filters for Object Detection. DAGM-Symposium (2007)
Olaf Ronneberger
3D Invariants for Automated Pollen Recognition. Ausgezeichnete Informatikdissertationen (2007)
Olaf Ronneberger, Qing Wang, Hans Burkhardt
3D Invariants with High Robustness to Local Deformations for Automated Pollen Recognition. DAGM-Symposium (2007)
Janina Schulz, Thorsten Schmidt, Olaf Ronneberger, Hans Burkhardt, Taras Pasternak, Alexander Dovzhenko, Klaus Palme
Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification. DAGM-Symposium (2006)
Janis Fehr, Catharina Sauer, Haymo Kurz, Olaf Ronneberger, Hans Burkhardt
Identifikation von Zellen in intaktem Gewebe. Bildverarbeitung für die Medizin (2006)
Olaf Ronneberger, Janis Fehr, Hans Burkhardt
Voxel-Wise Gray Scale Invariants for Simultaneous Segmentation and Classification. DAGM-Symposium (2005)
Janis Fehr, Olaf Ronneberger, Haymo Kurz, Hans Burkhardt
Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants. DAGM-Symposium (2005)
Olaf Ronneberger, Hans Burkhardt, Eckart Schultz
General-Purpose Object Recognition in 3D Volume Data Sets Using Gray-Scale Invariants --- Classification of Airborne Pollen-Grains Recorded with a Confocal Laser Scanning Microscope. ICPR (2) (2002)

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Publication Activity (10 Years)

Top Topics

Top Venues

Olaf Ronneberger