Hans J. Johnson

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 28

Top Topics

Mr Brain Images

Landmark Detection

Top Venues

Medical Imaging: Image Processing

Frontiers Neuroinformatics

Publications

Michal Brzus, Kevin Knoernschild, Jessica C. Sieren, Hans J. Johnson
PigSNIPE: Scalable Neuroimaging Processing Engine for Minipig MRI. Algorithms 16 (2) (2023)
Michal Brzus, Aaron D. Boes, Joel Bruss, Hans J. Johnson
Leveraging High-Quality Research Data for Ischemic Stroke Lesion Segmentation on Clinical Data. ISBI (2023)
Xing Yao, Ange Lou, Hao Li, Dewei Hu, Daiwei Lu, Han Liu, Jiacheng Wang, Zachary A. Stoebner, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
Novel application of the attention mechanism on medical image harmonization. Medical Imaging: Image Processing (2023)
Hao Li, Qibang Zhu, Dewei Hu, Manasvi R. Gunnala, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
Human brain extraction with deep learning. Medical Imaging: Image Processing (2022)
Michal Brzus, Alexander B. Powers, Kevin Knoernschild, Jessica C. Sieren, Hans J. Johnson
Multi-agent reinforcement learning pipeline for anatomical landmark detection in minipigs. Medical Imaging: Image Processing (2022)
Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
Self-supervised Test-Time Adaptation for Medical Image Segmentation. MLCN@MICCAI (2022)
M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng
MONAI: An open-source framework for deep learning in healthcare. CoRR (2022)
Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
MRI subcortical segmentation in neurodegeneration with cascaded 3D CNNs. Medical Imaging: Image Processing (2021)
Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
Longitudinal subcortical segmentation with deep learning. Medical Imaging: Image Processing (2021)
Arjit Jain, Alexander Powers, Hans J. Johnson
Robust Automatic Multiple Landmark Detection. ISBI (2020)
Kilian Hett, Rémi Giraud, Hans J. Johnson, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington's Disease. MICCAI (7) (2020)
Hao Li, Huahong Zhang, Dewei Hu, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
Generalizing MRI Subcortical Segmentation to Neurodegeneration. MLCN/RNO-AI@MICCAI (2020)
Eric S. Pahl, W. Nick Street, Hans J. Johnson, Alan I. Reed
A predictive model for kidney transplant graft survival using machine learning. CoRR (2020)
Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis of Deformation Fields in Huntington's Disease. CoRR (2020)
Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease. ISBI (2020)
Ziv Yaniv, Bradley C. Lowekamp, Hans J. Johnson, Richard Beare
Correction to: SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. J. Digit. Imaging 32 (6) (2019)
Leo Brueggeman, Tanner Koomar, Yongchao Huang, Brady Hoskins, Tien Tong, James Kent, Ethan Bahl, Charles E. Johnson, Alexander Powers, Douglas R. Langbehn, Jatin G. Vaidya, Hans J. Johnson, Jacob J. Michaelson
Ensemble Modeling of Neurocognitive Performance Using MRI-Derived Brain Structure Volumes. ABCD-NP@MICCAI (2019)
Ali Ghayoor, Jatin G. Vaidya, Hans J. Johnson
Robust automated constellation-based landmark detection in human brain imaging. NeuroImage 170 (2018)
Flor A. Espinoza, Jessica A. Turner, Victor M. Vergara, Robyn L. Miller, Eva Mennigen, Jingyu Liu, Maria B. Misiura, Jennifer Ciarochi, Hans J. Johnson, Jeffrey D. Long, Henry Jeremy Bockholt, Vincent A. Magnotta, Jane S. Paulsen, Vince D. Calhoun
Whole-Brain Connectivity in a Large Study of Huntington's Disease Gene Mutation Carriers and Healthy Controls. Brain Connect. 8 (3) (2018)
Renjie Hu, Venous Roshdibenam, Hans J. Johnson, Emil Eirola, Anton Akusok, Yoan Miche, Kaj-Mikael Björk, Amaury Lendasse
ELM-SOM: A Continuous Self-Organizing Map for Visualization. IJCNN (2018)
Ziv Yaniv, Bradley C. Lowekamp, Hans J. Johnson, Richard Beare
SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. J. Digit. Imaging 31 (3) (2018)
Sungmin Hong, James Fishbaugh, Morteza Rezanejad, Kaleem Siddiqi, Hans J. Johnson, Jane S. Paulsen, Eun Young Kim, Guido Gerig
Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis. Medical Imaging: Image Processing (2017)
Anton Akusok, Emil Eirola, Kaj-Mikael Björk, Yoan Miché, Hans J. Johnson, Amaury Lendasse
Brute-force Missing Data Extreme Learning Machine for Predicting Huntington's Disease. PETRA (2017)
Wei Shao, Gary E. Christensen, Hans J. Johnson, Joo Hyun Song, Oguz C. Durumeric, Casey P. Johnson, Joseph J. Shaffer, Vincent A. Magnotta, Jess G. Fiedorowicz, John A. Wemmie
Population Shape Collapse in Large Deformation Registration of MR Brain Images. CVPR Workshops (2016)
Mohammad Saleh Miri, Ali Ghayoor, Hans J. Johnson, Milan Sonka
Comparative study of multimodal intra-subject image registration methods on a publicly available database. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2016)
Prasanna Muralidharan, James Fishbaugh, Eun Young Kim, Hans J. Johnson, Jane S. Paulsen, Guido Gerig, P. Thomas Fletcher
Bayesian covariate selection in mixed-effects models for longitudinal shape analysis. ISBI (2016)
Ali Ghayoor, Jane S. Paulsen, Regina E. Y. Kim, Hans J. Johnson
Tissue classification of large-scale multi-site MR data using fuzzy k-nearest neighbor method. Medical Imaging: Image Processing (2016)
Jessica L. Forbes, Regina E. Y. Kim, Jane S. Paulsen, Hans J. Johnson
An Open-Source Label Atlas Correction Tool and Preliminary Results on Huntingtons Disease Whole-Brain MRI Atlases. Frontiers Neuroinformatics 10 (2016)
Regina E. Y. Kim, Peg Nopoulos, Jane S. Paulsen, Hans J. Johnson
Efficient and Extensible Workflow: Reliable Whole Brain Segmentation for Large-Scale, Multi-center Longitudinal Human MRI Analysis Using High Performance/Throughput Computing Resources. CLIP@MICCAI (2015)
Brian B. Avants, Hans J. Johnson, Nicholas J. Tustison
Neuroinformatics and the The Insight ToolKit. Frontiers Neuroinformatics 9 (2014)
Daniel Kostro, Ahmed Abdulkadir, Alexandra Durr, Raymund Roos, Blair R. Leavitt, Hans J. Johnson, David M. Cash, Sarah J. Tabrizi, Rachael I. Scahill, Olaf Ronneberger, Stefan Klöppel
Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. NeuroImage 98 (2014)
Prasanna Muralidharan, James Fishbaugh, Hans J. Johnson, Stanley Durrleman, Jane S. Paulsen, Guido Gerig, P. Thomas Fletcher
Diffeomorphic Shape Trajectories for Improved Longitudinal Segmentation and Statistics. MICCAI (3) (2014)
Ipek Oguz, Mahshid Farzinfar, Joy T. Matsui, François Budin, Zhexing Liu, Guido Gerig, Hans J. Johnson, Martin Andreas Styner
DTIPrep: quality control of diffusion-weighted images. Frontiers Neuroinformatics 8 (2014)
Audrey R. Verde, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Vicki W. Chanon, Charlotte A. Boettiger, Hans J. Johnson, Joy T. Matsui, Anuja Sharma, Casey Goodlett, Yundi Shi, Hongtu Zhu, Guido Gerig, Sylvain Gouttard, Clement Vachet, Martin Styner
UNC-Utah NA-MIC DTI framework: atlas based fiber tract analysis with application to a study of nicotine smoking addiction. Medical Imaging: Image Processing (2013)
Ali Ghayoor, Jatin G. Vaidya, Hans J. Johnson
Development of a novel constellation based landmark detection algorithm. Medical Imaging: Image Processing (2013)
Audrey R. Verde, François Budin, Jean-Baptiste Berger, Aditya Gupta, Mahshid Farzinfar, Adrien Kaiser, Mihye Ahn, Hans J. Johnson, Joy T. Matsui, Heather Cody Hazlett, Anuja Sharma, Casey Goodlett, Yundi Shi, Sylvain Gouttard, Clement Vachet, Joseph Piven, Hongtu Zhu, Guido Gerig, Martin Andreas Styner
UNC-Utah NA-MIC framework for DTI fiber tract analysis. Frontiers Neuroinformatics 7 (2013)
Eun Young Kim, Hans J. Johnson
Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration. Frontiers Neuroinformatics 7 (2013)
Vincent Magnotta, Joy T. Matsui, Dawei Liu, Hans J. Johnson, Jeffrey D. Long, Bradley D. Bolster Jr., Bryon A. Mueller, Kelvin O. Lim, Susumu Mori, Karl G. Helmer, Jessica A. Turner, Sarah A. J. Reading, Mark J. Lowe, Elizabeth H. Aylward, Laura A. Flashman, Greg Bonett, Jane S. Paulsen
MultiCenter Reliability of Diffusion Tensor Imaging. Brain Connect. 2 (6) (2012)
Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee
A Unified Image Registration Framework for ITK. WBIR (2012)
Ronald Pierson, Hans J. Johnson, Gregory Harris, Helen Keefe, Jane S. Paulsen, Nancy Andreasen, Vincent Magnotta
Fully automated analysis using BRAINS: AutoWorkup. NeuroImage 54 (1) (2011)
Eun Young Kim, Hans J. Johnson
Multi-structure segmentation of multi-modal brain images using artificial neural networks. Medical Imaging: Image Processing (2010)
Ronald Pierson, Gregory Harris, Hans J. Johnson, Steve Dunn, Vincent A. Magnotta
Maximize uniformity summation heuristic (MUSH): a highly accurate simple method for intracranial delineation. Medical Imaging: Image Processing (2009)
Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Vamsi K. Jammalamadaka, Ronald Pierson, Nancy Andreasen
Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. NeuroImage 39 (1) (2008)
Gary E. Christensen, Hans J. Johnson, Michael W. Vannier
Synthesizing average 3D anatomical shapes. NeuroImage 32 (1) (2006)
Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Nancy Andreasen
Automated brain segmentation using neural networks. Medical Imaging: Image Processing (2006)
Vincent A. Magnotta, Henry Jeremy Bockholt, Hans J. Johnson, Gary E. Christensen, Nancy C. Andreasen
Subcortical, cerebellar, and magnetic resonance based consistent brain image registration. NeuroImage 19 (2) (2003)
Pierre Hellier, Christian Barillot, Isabelle Corouge, Bernard Gibaud, Georges Le Goualher, D. Louis Collins, Alan C. Evans, Grégoire Malandain, Nicholas Ayache, Gary E. Christensen, Hans J. Johnson
Retrospective Evaluation of Inter-subject Brain Registration. IEEE Trans. Medical Imaging 22 (9) (2003)
Gary E. Christensen, Hans J. Johnson
Invertibility and transitivity analysis for nonrigid image registration. J. Electronic Imaging 12 (1) (2003)
Hans J. Johnson, Gary E. Christensen
Consistent Landmark and Intensity-based Image Registration. IEEE Trans. Medical Imaging 21 (5) (2002)
Gary E. Christensen, Hans J. Johnson
Consistent Image Registration. IEEE Trans. Medical Imaging 20 (7) (2001)
Blake L. Carlson, Gary E. Christensen, Hans J. Johnson, Michael W. Vannier
Evaluating template bias when synthesizing population averages. Medical Imaging: Image Processing (2001)
Hans J. Johnson, Gary E. Christensen
Landmark and Intensity-Based, Consistent Thin-Plate Spline Image Registration. IPMI (2001)
Hans J. Johnson, Gary E. Christensen, Jeffrey L. Marsh, Michael W. Vannier
Validation of probabilistic anatomical shape atlases. Medical Imaging: Image Processing (2000)
Gary E. Christensen, Hans J. Johnson, Tron A. Darvann, Nuno V. Hermann, Jeffrey L. Marsh
Midsagittal surface measurement of the head: an assessment of craniofacial asymmetry. Medical Imaging: Image Processing (1999)
Gary E. Christensen, Hans J. Johnson, John W. Haller, Jenny Melloy, Michael W. Vannier, Jeffrey L. Marsh
Synthesizing average 3D anatomical shapes using deformable templates. Medical Imaging: Image Processing (1999)