Stephen R. Aylward

Publication Activity (10 Years)

Years Active: 1992-2023
Publications (10 Years): 33

Top Topics

Image Registration

Grand Challenges

Anisotropic Diffusion

Ultrasound Images

Top Venues

Medical Image Anal.

Publications

Samuel Gerber, Marc Niethammer, Ebrahim Ebrahim, Joseph Piven, Stephen R. Dager, Martin Styner, Stephen R. Aylward, Andinet Enquobahrie
Optimal transport features for morphometric population analysis. Medical Image Anal. 84 (2023)
Jiayi Xu, Gaspard Thevenon, Timothee Chabat, Matthew McCormick, Forrest Li, Tom Birdsong, Ken Martin, Yueh Lee, Stephen R. Aylward
Interactive, in-browser cinematic volume rendering of medical images. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11 (4) (2023)
Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
Deep Decomposition for Stochastic Normal-Abnormal Transport. CVPR (2022)
M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng
MONAI: An open-source framework for deep learning in healthcare. CoRR (2022)
Lin Tian, Connor Puett, Peirong Liu, Zhengyang Shen, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
Fluid registration between lung CT and stationary chest tomosynthesis images. CoRR (2022)
Yehuda K. Ben-Zikri, María Helguera, David Fetzer, David A. Shrier, Stephen R. Aylward, Deepak Chittajallu, Marc Niethammer, Nathan D. Cahill, Cristian A. Linte
A feature-based affine registration method for capturing background lung tissue deformation for ground glass nodule tracking. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10 (5) (2022)
Samuel Gerber, Marc Niethammer, Ebrahim Ebrahim, Joseph Piven, Stephen R. Dager, Martin Styner, Stephen R. Aylward, Andinet Enquobahrie
Optimal Transport Features for Morphometric Population Analysis. CoRR (2022)
Peirong Liu, Lin Tian, Yubo Zhang, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
Discovering Hidden Physics Behind Transport Dynamics. CVPR (2021)
Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
Perfusion Imaging: An Advection Diffusion Approach. IEEE Trans. Medical Imaging 40 (12) (2021)
Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
Deep Decomposition for Stochastic Normal-Abnormal Transport. CoRR (2021)
Lin Tian, Connor Puett, Peirong Liu, Zhengyang Shen, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images. MICCAI (3) (2020)
Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
PIANO: Perfusion Imaging via Advection-Diffusion. MICCAI (7) (2020)
Tamas Ungi, Hastings Greer, Kyle Sunderland, Victoria Wu, Zachary M. C. Baum, Christopher Schlenger, Matthew Oetgen, Kevin Cleary, Stephen R. Aylward, Gabor Fichtinger
Automatic Spine Ultrasound Segmentation for Scoliosis Visualization and Measurement. IEEE Trans. Biomed. Eng. 67 (11) (2020)
Peirong Liu, Yueh Z. Lee, Stephen R. Aylward, Marc Niethammer
Perfusion Imaging: A Data Assimilation Approach. CoRR (2020)
Peirong Liu, Lin Tian, Yubo Zhang, Stephen R. Aylward, Yueh Z. Lee, Marc Niethammer
Discovering Hidden Physics Behind Transport Dynamics. CoRR (2020)
Brad T. Moore, Sean Montgomery, Marc Niethammer, Hastings Greer, Stephen R. Aylward
Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound. ASMUS/PIPPI@MICCAI (2020)
Juan D. Rojas, Virginie Papadopoulou, Tomasz J. Czernuszewicz, Rajalekha M. Rajamahendiran, Anna Chytil, Yun-Chen Chiang, Diana C. Chong, Victoria L. Bautch, W. Kimryn Rathmell, Stephen R. Aylward, Ryan C. Gessner, Paul A. Dayton
Ultrasound Measurement of Vascular Density to Evaluate Response to Anti-Angiogenic Therapy in Renal Cell Carcinoma. IEEE Trans. Biomed. Eng. 66 (3) (2019)
Deepak Roy Chittajallu, Matthew McCormick, Samuel Gerber, Tomasz J. Czernuszewicz, Ryan C. Gessner, Monte S. Willis, Marc Niethammer, Roland Kwitt, Stephen R. Aylward
Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. IEEE Trans. Biomed. Eng. 66 (1) (2019)
Hastings Greer, Samuel Gerber, Marc Niethammer, Roland Kwitt, Matt McCormick, Deepak Roy Chittajallu, Neal Siekierski, Matthew Oetgen, Kevin Cleary, Stephen R. Aylward
Scoliosis screening and monitoring using self contained ultrasound and neural networks. ISBI (2018)
Adriënne M. Mendrik, Stephen R. Aylward
Beyond the Leaderboard: Insight and Deployment Challenges to Address Research Problems. CoRR (2018)
Xu Han, Spyridon Bakas, Roland Kwitt, Stephen R. Aylward, Hamed Akbari, Michel Bilello, Christos Davatzikos, Marc Niethammer
Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans. BrainLes@MICCAI (1) (2018)
Xu Han, Roland Kwitt, Stephen R. Aylward, Spyridon Bakas, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer
Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. NeuroImage 176 (2018)
Samuel Gerber, Marc Niethammer, Martin Styner, Stephen R. Aylward
Exploratory Population Analysis with Unbalanced Optimal Transport. MICCAI (3) (2018)
Xu Han, Xiao Yang, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
Efficient registration of pathological images: A joint PCA/image-reconstruction approach. ISBI (2017)
Xu Han, Xiao Yang, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
Efficient Registration of Pathological Images: A Joint PCA/Image-Reconstruction Approach. CoRR (2017)
Xu Han, Roland Kwitt, Stephen R. Aylward, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer
Brain Extraction from Normal and Pathological Images: A Joint PCA/Image-Reconstruction Approach. CoRR (2017)
Matthew McCormick, Mark L. Palmeri, Jean-Christophe Fillion-Robin, Stephen R. Aylward
SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities. J. Open Source Softw. 2 (10) (2017)
Maeliss Jallais, Hastings Greer, Samuel Gerber, Matt McCormick, Deepak Roy Chittajallu, Neal Siekierski, Stephen R. Aylward
Ultrasound Augmentation: Rapid 3-D Scanning for Tracking and On-Body Display. BIVPCS/POCUS@MICCAI (2017)
Samuel Gerber, Maeliss Jallais, Hastings Greer, Matt McCormick, Sean Montgomery, Bradley Freeman, Deborah Shipley Kane, Deepak Roy Chittajallu, Neal Siekierski, Stephen R. Aylward
Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images. BIVPCS/POCUS@MICCAI (2017)
James Fishbaugh, Marcel Prastawa, Bo Wang, Patrick Reynolds, Stephen R. Aylward, Guido Gerig
Data-Driven Rank Aggregation with Application to Grand Challenges. MICCAI (2) (2017)
Stephen R. Aylward, Matthew McCormick, Hyun Jae Kang, Sharif Razzaque, Roland Kwitt, Marc Niethammer
Ultrasound spectroscopy. ISBI (2016)
Tina Kapur, Steve Pieper, Andriy Fedorov, Jean-Christophe Fillion-Robin, Michael Halle, Lauren O'Donnell, Andras Lasso, Tamas Ungi, Csaba Pinter, Julien Finet, Sonia Pujol, Jagadeesan Jayender, Junichi Tokuda, Isaiah Norton, Raúl San José Estépar, David T. Gering, Hugo J. W. L. Aerts, Marianna Jakab, Nobuhiko Hata, Luiz Ibáñez, Daniel J. Blezek, Jim Miller, Stephen R. Aylward, W. Eric L. Grimson, Gabor Fichtinger, William M. Wells III, William E. Lorensen, William J. Schroeder, Ron Kikinis
Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. Medical Image Anal. 33 (2016)
Xiao Yang, Xu Han, Eunbyung Park, Stephen R. Aylward, Roland Kwitt, Marc Niethammer
Registration of Pathological Images. SASHIMI@MICCAI (2016)
Beatriz Paniagua, Dzenan Zukic, Ricardo Ortiz, Stephen R. Aylward, Brent Golden, Tung Nguyen, Andinet Enquobahrie
Ultrasound-Guided Navigation System for Orthognathic Surgery. AE-CAI (2015)
Julien Finet, Ricardo Ortiz, Johan Andruejol, Andinet Enquobahrie, Julien Jomier, Jason Payne, Stephen R. Aylward
Bender: An Open Source Software for Efficient Model Posing and Morphing. ISBMS (2014)
Xiaoxiao Liu, Marc Niethammer, Roland Kwitt, Matthew McCormick, Stephen R. Aylward
Low-Rank to the Rescue - Atlas-Based Analyses in the Presence of Pathologies. MICCAI (3) (2014)
Roland Kwitt, Sharif Razzaque, Jeffrey Lowell, Stephen R. Aylward
Variability sensitivity of dynamic texture based recognition in clinical CT data. Medical Imaging: Image Processing (2014)
Roland Kwitt, Nuno Vasconcelos, Sharif Razzaque, Stephen R. Aylward
Localizing target structures in ultrasound video - A phantom study. Medical Image Anal. 17 (7) (2013)
Roland Kwitt, Danielle F. Pace, Marc Niethammer, Stephen R. Aylward
Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels. MICCAI (2) (2013)
Andinet Enquobahrie, Vikas Shivaprabhu, Stephen R. Aylward, Julien Finet, Kevin Cleary, Ron Alterovitz
Patient-specific port placement for laparoscopic surgery using atlas-based registration. Medical Imaging: Image-Guided Procedures (2013)
Danielle F. Pace, Stephen R. Aylward, Marc Niethammer
A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs. IEEE Trans. Medical Imaging 32 (11) (2013)
Debora Testi, Daniele Giunchi, Gordon Clapworthy, Stephen R. Aylward, Xavier Planes, Richard Christie
New interactive visualisation of multiscale biomedical data. SIGGRAPH Posters (2012)
Roland Kwitt, Nuno Vasconcelos, Sharif Razzaque, Stephen R. Aylward
Recognition in Ultrasound Videos: Where Am I? MICCAI (3) (2012)
Tina Kapur, Steve Pieper, Ross T. Whitaker, Stephen R. Aylward, Marianna Jakab, William J. Schroeder, Ron Kikinis
The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Marc Niethammer, Gabriel L. Hart, Danielle F. Pace, Paul M. Vespa, Andrei Irimia, John D. Van Horn, Stephen R. Aylward
Geometric Metamorphosis. MICCAI (2) (2011)
Danielle F. Pace, Marc Niethammer, Stephen R. Aylward
Sliding Geometries in Deformable Image Registration. Abdominal Imaging (2011)
Danielle F. Pace, Andinet Enquobahrie, Hua Yang, Stephen R. Aylward, Marc Niethammer
Deformable image registration of sliding organs using anisotropic diffusive regularization. ISBI (2011)
Michel A. Audette, Denis Rivière, Charles Law, Luis Ibáñez, Stephen R. Aylward, Julien Finet, Xunlei Wu, Matthew G. Ewend
Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software. Medical Imaging: Image-Guided Procedures (2011)
Guillaume Piliere, Mark H. Van Horn, Robert Dixon, Joseph Stavas, Stephen R. Aylward, Elizabeth Bullitt
Vessel target location estimation during the TIPS procedure. Medical Image Anal. 13 (3) (2009)
Joohwi Lee, Julien Jomier, Stephen R. Aylward, Mike Tyszka, Sheryl Moy, Jean Lauder, Martin Styner
Evaluation of atlas based mouse brain segmentation. Medical Imaging: Image Processing (2009)
Zheen Zhao, David K. Wallace, Sharon F. Freedman, Stephen R. Aylward
A tool for computer-aided diagnosis of retinopathy of prematurity. Medical Imaging: Computer-Aided Diagnosis (2008)
Ipek Oguz, Joshua E. Cates, P. Thomas Fletcher, Ross T. Whitaker, Derek Cool, Stephen R. Aylward, Martin Andreas Styner
Cortical correspondence using entropy-based particle systems and local features. ISBI (2008)
Julien Jomier, Elizabeth Bullitt, Mark H. Van Horn, Chetna Pathak, Stephen R. Aylward
3D/2D Model-to-Image Registration Applied to TIPS Surgery. MICCAI (2) (2006)
Luis Ibáñez, Ricardo S. Avila, Stephen R. Aylward
Open Source and Open Science: how it is changing the medical imaging community. ISBI (2006)
Peng Cheng, Hui Zhang, Hee-su Kim, Kevin Gary, M. Brian Blake, David Gobbi, Stephen R. Aylward, Julien Jomier, Andinet Enquobahrie, Rick Avila, Luis Ibáñez, Kevin Cleary
IGSTK: framework and example application using an open source toolkit for image-guided surgery applications. Medical Imaging: Image-Guided Procedures (2006)
Kevin Gary, Luis Ibáñez, Stephen R. Aylward, David Gobbi, M. Brian Blake, Kevin Cleary
IGSTK: An Open Source Software Toolkit for Image-Guided Surgery. Computer 39 (4) (2006)
Zheen Zhao, Stephen R. Aylward, Eam Khwang Teoh
A Novel 3D Partitioned Active Shape Model for Segmentation of Brain MR Images. MICCAI (2005)
Stephen R. Aylward, Julien Jomier, Christelle Vivert, Vincent LeDigarcher, Elizabeth Bullitt
Spatial Graphs for Intra-cranial Vascular Network Characterization, Generation, and Discrimination. MICCAI (2005)
Elizabeth Bullitt, Keith E. Muller, Inkyung Jung, Weili Lin, Stephen R. Aylward
Analyzing attributes of vessel populations. Medical Image Anal. 9 (1) (2005)
Julien Jomier, Vincent LeDigarcher, Stephen R. Aylward
Automatic Vascular Tree Formation Using the Mahalanobis Distance. MICCAI (2) (2005)
Luis Ibáñez, Gordon L. Kindlmann, Stephen R. Aylward
Hot topics in 3D medical image visualization. SIGGRAPH Courses (2005)
Julien Jomier, Vincent LeDigarcher, Stephen R. Aylward
Comparison of Vessel Segmentations Using STAPLE. MICCAI (2005)
Damion Shelton, George D. Stetten, Stephen R. Aylward, Luis Ibáñez, Aaron Cois, Charles V. Stewart
Teaching medical image analysis with the Insight Toolkit. Medical Image Anal. 9 (6) (2005)
Julien Jomier, Stephen R. Aylward
Rigid and Deformable Vasculature-to-Image Registration: A Hierarchical Approach. MICCAI (1) (2004)
Yonatan Fridman, Stephen M. Pizer, Stephen R. Aylward, Elizabeth Bullitt
Extracting branching tubular object geometry via cores. Medical Image Anal. 8 (3) (2004)
Julien Jomier, Sue Weeks, Stephen R. Aylward
Vascular image registration for intra-operative 3D ultrasound annotation. CARS (2004)
Elizabeth Bullitt, Inkyung Jung, Keith E. Muller, Guido Gerig, Stephen R. Aylward, Sarang C. Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend
Determining Malignancy of Brain Tumors by Analysis of Vessel Shape. MICCAI (2) (2004)
Julien Jomier, Erwann Rault, Stephen R. Aylward
Automatic Quantification of Pupil Dilation Under Stress. ISBI (2004)
Elizabeth Bullitt, Guido Gerig, Stephen M. Pizer, Weili Lin, Stephen R. Aylward
Measuring Tortuosity of the Intracerebral Vasculature. IEEE Trans. Medical Imaging 22 (9) (2003)
Stephen M. Pizer, Guido Gerig, Sarang C. Joshi, Stephen R. Aylward
Multiscale medial shape-based analysis of image objects. Proc. IEEE 91 (10) (2003)
Yonatan Fridman, Stephen M. Pizer, Stephen R. Aylward, Elizabeth Bullitt
Segmenting 3D Branching Tubular Structures Using Cores. MICCAI (2) (2003)
Derek Cool, Dini Chillet, Jisung Kim, Jean-Philippe Guyon, Mark Foskey, Stephen R. Aylward
Tissue-Based Affine Registration of Brain Images to form a Vascular Density Atlas MICCAI (2) (2003)
Julien Jomier, David K. Wallace, Stephen R. Aylward
Quantification of Retinopathy of Prematurity via Vessel Segmentation. MICCAI (2) (2003)
Jean-Philippe Guyon, Mark Foskey, Jisung Kim, Zeynep Firat, Barbara Davis, Karen Haneke, Stephen R. Aylward
VETOT, Volume Estimation and Tracking Over Time: Framework and Validation. MICCAI (2) (2003)
Elizabeth Bullitt, Guido Gerig, Stephen R. Aylward, Sarang C. Joshi, J. Keith Smith, Matthew G. Ewend, Weili Lin
Vascular Attributes and Malignant Brain Tumors. MICCAI (1) (2003)
Stephen R. Aylward, Julien Jomier, Susan Weeks, Elizabeth Bullitt
Registration and Analysis of Vascular Images. Int. J. Comput. Vis. 55 (2-3) (2003)
Dini Chillet, Julien Jomier, Derek Cool, Stephen R. Aylward
Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method. MICCAI (1) (2003)
Benoît Jolly, Mark H. Van Horn, Stephen R. Aylward, Elizabeth Bullitt
Needle Detection and Tracking in the TIPS Endovascular Procedure. MICCAI (2) (2003)
Stephen R. Aylward, Elizabeth Bullitt
Initialization, Noise, Singularities and Scale in Height Ridge Traversal for Tubular Object Centerline Extraction. IEEE Trans. Medical Imaging 21 (2) (2002)
Luis Ibáñez, Lydia Ng, James C. Gee, Stephen R. Aylward
Registration patterns: the generic framework for image registration of the insight toolkit. ISBI (2002)
Elizabeth Bullitt, Stephen R. Aylward
Volume Rendering of Segmented Image Objects. IEEE Trans. Medical Imaging 21 (8) (2002)
Stephen R. Aylward, Julien Jomier, Jean-Philippe Guyon, Susan Weeks
Intra-operative 3D ultrasound augmentation. ISBI (2002)
Stephen R. Aylward
Continuous mixture modeling via goodness-of-fit ridges. Pattern Recognit. 35 (9) (2002)
Elizabeth Bullitt, Stephen R. Aylward
Volume Rendering of Segmented Tubular Objects. MICCAI (2001)
Elizabeth Bullitt, Stephen R. Aylward, J. Keith Smith, Suresh K. Mukherji, Michael R. Jiroutek, Keith E. Muller
Symbolic description of intracerebral vessels segmented from magnetic resonance angiograms and evaluation by comparison with X-ray angiograms. Medical Image Anal. 5 (2) (2001)
Stephen R. Aylward, Susan Weeks, Elizabeth Bullitt
Analysis of the Parameter Space of a Metric for Registering 3D Vascular Images. MICCAI (2001)
Elizabeth Bullitt, Stephen R. Aylward
Analysis of Time-Varing Images Using 3-D Vascular Models. AIPR (2001)
Michael Rosenthal, Susan Weeks, Stephen R. Aylward, Elizabeth Bullitt, Henry Fuchs
Intraoperative Tracking of Anatomical Structures Using Fluoroscopy and a Vascular Balloon Catheter. MICCAI (2001)
Elizabeth Bullitt, Stephen R. Aylward, Alan Liu, Jeffrey Stone, Suresh K. Mukherji, Chris Coffey, Guido Gerig, Stephen M. Pizer
3D Graph Description of the Intracerebral Vasculature from Segmented MRA and Tests of Accuracy by Comparison with X-ray Angiograms. IPMI (1999)
Stephen R. Aylward, Bradley M. Hemminger, Etta D. Pisano
Mixture Modeling for Digital Mammogram Display and Analysis. Digital Mammography / IWDM (1998)
Elizabeth Bullitt, Alan Liu, Stephen R. Aylward, Stephen M. Pizer
Reconstruction of the Intracerebral Vasculature from MRA and a Pair of Projection Views. IPMI (1997)
Stephen R. Aylward, Stephen M. Pizer
Continuous Gaussian Mixture Modeling. IPMI (1997)
Gerald E. Peterson, Daniel C. St. Clair, Stephen R. Aylward, William E. Bond
Using Taguchi's method of experimental design to control errors in layered perceptrons. IEEE Trans. Neural Networks 6 (4) (1995)
Stephen R. Aylward, James M. Coggins, Ted Cizadlo, Nancy C. Andreasen
Spatially invariant classification of tissues in MR images. VBC (1994)
William E. Bond, Daniel C. St. Clair, Michael Amirfathi, Christopher J. Merz, Stephen R. Aylward
Neural network analysis of nondestructive evaluation patterns. SAC (1992)
Daniel C. St. Clair, William E. Bond, A. K. Rigler, Stephen R. Aylward
An evaluation of learning performance in backpropagation neural networks and decision-tree classifier systems. SAC (1992)