Andriy Fedorov

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 16

Top Topics

Convolutional Neural Networks

Prostate Biopsy

Lesion Segmentation

Top Venues

Medical Imaging: Image-Guided Procedures

Int. J. Comput. Assist. Radiol. Surg.

Publications

Christopher P. Bridge, Chris Gorman, Steven D. Pieper, Sean W. Doyle, Jochen K. Lennerz, Jayashree Kalpathy-Cramer, David A. Clunie, Andriy Fedorov, Markus D. Herrmann
Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology. J. Digit. Imaging 35 (6) (2022)
Christopher P. Bridge, Chris Gorman, Steven D. Pieper, Sean W. Doyle, Jochen K. Lennerz, Jayashree Kalpathy-Cramer, David A. Clunie, Andriy Fedorov, Markus D. Herrmann
Highdicom: A Python library for standardized encoding of image annotations and machine learning model outputs in pathology and radiology. CoRR (2021)
Christian Herz, Kemal Tuncali, Andriy Fedorov, Kyle MacNeil, Peter A. Behringer, Junichi Tokuda, Alireza Mehrtash, Parvin Mousavi, Ron Kikinis, Fiona M. Fennessy, Clare M. Tempany
Open Source Platform for Transperineal In-Bore MRI-Guided Targeted Prostate Biopsy. IEEE Trans. Biomed. Eng. 67 (2) (2020)
Kyle MacNeil, Aritrick Chatterjee, Clare M. Tempany, Aytekin Oto, Andriy Fedorov
Application of open-source computational tools to focal laser ablation of the prostate. Medical Imaging: Image-Guided Procedures (2019)
Alireza Mehrtash, Mohsen Ghafoorian, Guillaume Pernelle, Alireza Ziaei, Friso G. Heslinga, Kemal Tuncali, Andriy Fedorov, Ron Kikinis, Clare M. Tempany, William M. Wells III, Purang Abolmaesumi, Tina Kapur
Automatic Needle Segmentation and Localization in MRI With 3-D Convolutional Neural Networks: Application to MRI-Targeted Prostate Biopsy. IEEE Trans. Medical Imaging 38 (4) (2019)
Anneke Meyer, Marko Rak, Daniel Schindele, Simon Blaschke, Martin Schostak, Andriy Fedorov, Christian Hansen
Towards Patient-Individual PI-Rads v2 Sector Map: Cnn for Automatic Segmentation of Prostatic Zones From T2-Weighted MRI. ISBI (2019)
Ahmed Hosny, Michael Schwier, Christoph Berger, Evin Pinar Örnek, Mehmet Turan, Phi V. Tran, Leon Weninger, Fabian Isensee, Klaus H. Maier-Hein, Richard McKinley, Michael T. Lu, Udo Hoffmann, Bjoern H. Menze, Spyridon Bakas, Andriy Fedorov, Hugo J. W. L. Aerts
ModelHub.AI: Dissemination Platform for Deep Learning Models. CoRR (2019)
Anneke Meyer, Alireza Mehrtash, Marko Rak, Daniel Schindele, Martin Schostak, Clare M. Tempany, Tina Kapur, Purang Abolmaesumi, Andriy Fedorov, Christian Hansen
Automatic high resolution segmentation of the prostate from multi-planar MRI. ISBI (2018)
Naiyun Zhou, Andriy Fedorov, Fiona Fennessy, Ron Kikinis, Yi Gao
Large scale digital prostate pathology image analysis combining feature extraction and deep neural network. CoRR (2017)
Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken, Andriy Fedorov, Purang Abolmaesumi, Bram Platel, William M. Wells III
Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation. MICCAI (3) (2017)
Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken, Andriy Fedorov, Purang Abolmaesumi, Bram Platel, William M. Wells III
Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation. CoRR (2017)
Andriy Fedorov, Daniel L. Rubin, David A. Clunie, Steve Pieper, Ron Kikinis
Standardized communications of quantitative image analysis results using DICOM: Establishing interoperability through outreach and community engagement. CRI (2017)
Alireza Mehrtash, Alireza Sedghi, Mohsen Ghafoorian, Mehdi Taghipour, Clare M. Tempany, William M. Wells III, Tina Kapur, Parvin Mousavi, Purang Abolmaesumi, Andriy Fedorov
Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks. Medical Imaging: Computer-Aided Diagnosis (2017)
Alireza Mehrtash, Mehran Pesteie, Jorden Hetherington, Peter A. Behringer, Tina Kapur, William M. Wells III, Robert Rohling, Andriy Fedorov, Purang Abolmaesumi
DeepInfer: open-source deep learning deployment toolkit for image-guided therapy. Medical Imaging: Image-Guided Procedures (2017)
Shahram Mohrehkesh, Andriy Fedorov, Arun Brahmavar Vishwanatha, Fotis Drakopoulos, Ron Kikinis, Nikos Chrisochoides
Large Scale Cloud-Based Deformable Registration for Image Guided Therapy. CHASE (2016)
Tina Kapur, Steve Pieper, Andriy Fedorov, Jean-Christophe Fillion-Robin, Michael Halle, Lauren O'Donnell, Andras Lasso, Tamas Ungi, Csaba Pinter, Julien Finet, Sonia Pujol, Jagadeesan Jayender, Junichi Tokuda, Isaiah Norton, Raúl San José Estépar, David T. Gering, Hugo J. W. L. Aerts, Marianna Jakab, Nobuhiko Hata, Luiz Ibáñez, Daniel J. Blezek, Jim Miller, Stephen R. Aylward, W. Eric L. Grimson, Gabor Fichtinger, William M. Wells III, William E. Lorensen, William J. Schroeder, Ron Kikinis
Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. Medical Image Anal. 33 (2016)
Peter A. Behringer, Christian Herz, Tobias Penzkofer, Kemal Tuncali, Clare M. Tempany, Andriy Fedorov
Open-Source Platform for Prostate Motion Tracking During in-Bore Targeted MRI-Guided Biopsy. CLIP@MICCAI (2015)
Andriy Fedorov, Siavash Khallaghi, C. Antonio Sánchez, Andras Lasso, Sidney S. Fels, Kemal Tuncali, Emily Neubauer Sugar, Tina Kapur, Chenxi Zhang, William M. Wells III, Paul L. Nguyen, Purang Abolmaesumi, Clare M. Tempany
Open-source image registration for MRI-TRUS fusion-guided prostate interventions. Int. J. Comput. Assist. Radiol. Surg. 10 (6) (2015)
Helen Xu, Andras Lasso, Andriy Fedorov, Kemal Tuncali, Clare M. Tempany, Gabor Fichtinger
Multi-slice-to-volume registration for MRI-guided transperineal prostate biopsy. Int. J. Comput. Assist. Radiol. Surg. 10 (5) (2015)
Yixun Liu, Andriy Kot, Fotis Drakopoulos, Chengjun Yao, Andriy Fedorov, Andinet Enquobahrie, Olivier Clatz, Nikos P. Chrisochoides
An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery. Frontiers Neuroinformatics 8 (2014)
Sang-Eun Song, Kemal Tuncali, Junichi Tokuda, Andriy Fedorov, Tobias Penzkofer, Fiona Fennessy, Clare M. Tempany, Kitaro Yoshimitsu, John Magill, Nobuhiko Hata
Workflow assessment of 3T MRI-guided transperineal targeted prostate biopsy using a robotic needle guidance. Medical Imaging: Image-Guided Procedures (2014)
Andriy Fedorov, William M. Wells III, Ron Kikinis, Clare M. Tempany, Mark G. Vangel
Application of Tolerance Limits to the Characterization of Image Registration Performance. IEEE Trans. Medical Imaging 33 (7) (2014)
Andriy Fedorov, Sang-Eun Song, Tina Kapur, Robert Owen, Emily Neubauer Sugar, Paul Nguyen, William M. Wells III, Clare M. Tempany
Prototype Design and Phantom Evaluation of a Device for Co-registered MRI/TRUS Imaging of the Prostate. CLIP (2013)
Jan Egger, Tina Kapur, Andriy Fedorov, Steve Pieper, James V. Miller, Harini Veeraraghavan, Bernd Freisleben, Alexandra J. Golby, Christopher Nimsky, Ron Kikinis
GBM Volumetry using the 3D Slicer Medical Image Computing Platform CoRR (2013)
Petter Risholm, Firdaus Janoos, Jennifer Pursley, Andriy Fedorov, Clare M. Tempany, Robert A. Cormack, William M. Wells III
Selection of Optimal Hyper-Parameters for Estimation of Uncertainty in MRI-TRUS Registration of the Prostate. MICCAI (3) (2012)
Mehdi Moradi, Firdaus Janoos, Andriy Fedorov, Petter Risholm, Tina Kapur, Luciant D. Wolfsberger, Paul L. Nguyen, Clare M. Tempany, William M. Wells III
Two solutions for registration of ultrasound to MRI for image-guided prostate interventions. EMBC (2012)
Mehdi Moradi, Christian Wachinger, Andriy Fedorov, William M. Wells III, Tina Kapur, Luciant D. Wolfsberger, Paul Nguyen, Clare M. Tempany
MRI Confirmed Prostate Tissue Classification with Laplacian Eigenmaps of Ultrasound RF Spectra. MLMI (2012)
Petter Risholm, Andriy Fedorov, Jennifer Pursley, Kemal Tuncali, Robert A. Cormack, William M. Wells III
Probabilistic non-rigid registration of prostate images: Modeling and quantifying uncertainty. ISBI (2011)
Yixun Liu, Andriy Fedorov, Ron Kikinis, Nikos Chrisochoides
Non-Rigid Registration for brain MRI: faster and cheaper. Int. J. Funct. Informatics Pers. Medicine 3 (1) (2010)
Yixun Liu, Andriy Fedorov, Ron Kikinis, Nikos Chrisochoides
Real-Time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture. BIBM (2009)
Nikos Chrisochoides, Andrey N. Chernikov, Andriy Fedorov, Andriy Kot, Leonidas Linardakis, Panagiotis A. Foteinos
Towards Exascale Parallel Delaunay Mesh Generation. IMR (2009)
Andriy Fedorov, Nikos Chrisochoides
Toward improved tumor targeting for image guided neurosurgery with intra-operative parametric search using distributed and grid computing. IPDPS (2008)
Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin
A quantitative assessment of approaches to mesh generation for surgical simulation. Eng. Comput. 24 (4) (2008)
Andriy Fedorov, Eric Billet, Marcel Prastawa, Guido Gerig, Alireza Radmanesh, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides
Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures. ISVC (1) (2008)
Andriy Fedorov, Nikos Chrisochoides
Tetrahedral Mesh Generation for Non-rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions. IMR (2008)
Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin
Application-Driven Quantitative Assessment of Approaches to Mesh Generation. ISBI (2007)
Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Daniel Goldberg-Zimring, Daniel F. Kacher, Stephen Whalen, Ron Kikinis, Ferenc A. Jolesz, Olivier Clatz, Simon K. Warfield, Peter M. Black, Alexandra J. Golby
Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. International Conference on Computational Science (1) (2007)
Neculai Archip, Olivier Clatz, Stephen Whalen, Daniel F. Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc A. Jolesz, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. NeuroImage 35 (2) (2007)
Andriy Fedorov, Nikos Chrisochoides, Ron Kikinis, Simon K. Warfield
An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. ISBI (2006)
Neculai Archip, Andriy Fedorov, Bryn Lloyd, Nikos Chrisochoides, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery. Medical Imaging: Image-Guided Procedures (2006)
Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter M. Black, Olivier Clatz, Alexandra J. Golby, Ron Kikinis, Simon K. Warfield
Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. SC (2006)
Maria-Cecilia Rivara, Carlo Calderon, Andriy Fedorov, Nikos Chrisochoides
Parallel decoupled terminal-edge bisection method for 3D mesh generation. Eng. Comput. 22 (2) (2006)
Andriy Fedorov, Nikos Chrisochoides
Communication Support for Dynamic Load Balancing of Irregular Adaptive Applications. ICPP Workshops (2004)
Andriy Fedorov, Nikos Chrisochoides
Location management in object-based distributed computing. CLUSTER (2004)
Nikos Chrisochoides, Andriy Fedorov, Bruce Lowekamp, Marcia Zangrilli, Craig A. Lee
A Case Study of Optimistic Computing on the Grid: Parallel Mesh Generation. IPDPS (2003)