Nico Scherf

ORCID

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 15

Top Venues

Dresden University of Technology (PHD)

Education History

Dresden University of Technology

PHD

Publications

Charlotte Beylier, Simon M. Hofmann, Nico Scherf
Revealing the learning process in reinforcement learning agents through attention-oriented metrics. CoRR (2024)
Nikola Milosevic, Gesine Müller, Jan Huisken, Nico Scherf
Open Problem: Active Representation Learning. CoRR (2024)
Johannes Waschke, Mario Hlawitschka, Kerim Anlas, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf
linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. PLoS Comput. Biol. 17 (11) (2021)
Elena Williams, Sebastian Niehaus, Janis Reinelt, Alberto Merola, Paul Glad Mihai, Ingo Roeder, Nico Scherf, Maria del C. Valdés Hernández
Quality control for more reliable integration of deep learning-based image segmentation into medical workflows. CoRR (2021)
Patryk Burek, Heinrich Herre, Nico Scherf
On the Ontological Foundations of Cellular Development. JOWO (2020)
Patryk Burek, Nico Scherf, Heinrich Herre
On the Formal Representation and Annotation of Cellular Genealogies. EKAW (2020)
Nastassya Horlava, Alisa Mironenko, Sebastian Niehaus, Sebastian Wagner, Ingo Roeder, Nico Scherf
A comparative study of semi- and self-supervised semantic segmentation of biomedical microscopy data. CoRR (2020)
Marie Kloenne, Sebastian Niehaus, Leonie Lampe, Alberto Merola, Janis Reinelt, Nico Scherf
Convolutional neural network stacking for medical image segmentation in CT scans. CoRR (2019)
Patryk Burek, Nico Scherf, Heinrich Herre
Foundations of the Cell Tracking Ontology. JOWO (2019)
Patryk Burek, Nico Scherf, Heinrich Herre
Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semant. 10 (1) (2019)
Patryk Burek, Nico Scherf, Heinrich Herre
A pattern-based approach to a cell tracking ontology. KES (2019)
Konstantin Thierbach, Pierre-Louis Bazin, Walter de Back, Filippos Gavriilidis, Evgeniya Kirilina, Carsten Jäger, Markus Morawski, Stefan Geyer, Nikolaus Weiskopf, Nico Scherf
Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics. MLMI@MICCAI (2018)
Markus Morawski, Evgeniya Kirilina, Nico Scherf, Carsten Jäger, Katja Reimann, Robert Trampel, Filippos Gavriilidis, Stefan Geyer, Bernd Biedermann, Thomas Arendt, Nikolaus Weiskopf
Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology. NeuroImage 182 (2018)
Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. Int. J. Comput. Vis. 122 (3) (2017)
Konstantin Thierbach, Gopi Shah, Ingmar Glauche, Jan Huisken, Ingo Roeder, Nico Scherf
Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm. ISBI (2016)
Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinform. 31 (11) (2015)
Tim Becker, W. Kanje, Daniel H. Rapoport, Konstantin Thierbach, Nico Scherf, Ingo Roeder, Amir Madany Mamlouk
The benchmark data SET CeTReS.B-MI for in vitro mitosis detection. ISBI (2014)
Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder
Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking. Bildverarbeitung für die Medizin (2013)
Nico Scherf, Thomas Zerjatke, K. Klemm, Ingmar Glauche, Ingo Roeder
Beyond genealogies: Mutual information of causal paths to analyse single cell tracking data. ISBI (2013)
Nico Scherf, Christian Ludborzs, Konstantin Thierbach, Jens-Peer Kuska, Ulf-Dietrich Braumann, Patrick Scheibe, Tilo Pompe, Ingmar Glauche, Ingo Roeder
FluidTracks - Combining Nonlinear Image Registration and Active Contours for Cell Tracking. Bildverarbeitung für die Medizin (2012)
Nico Scherf, Maria Herberg, Konstantin Thierbach, Thomas Zerjatke, Tuzer Kalkan, Peter Humphreys, Austin Smith, Ingmar Glauche, Ingo Roeder
Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions. Bioinform. 28 (18) (2012)
Nico Scherf, Jens-Peer Kuska, Ulf-Dietrich Braumann, Katja Franke, Tilo Pompe, Ingo Röder
Spatio-temporal Analysis of Unstained Cells In-vitro. Bildverarbeitung für die Medizin (2009)
Nico Scherf, Jens-Peer Kuska, Claudia Heine, Ulf-Dietrich Braumann, Heike Franke
Segmentation of Axonal Fibres in Tissue Slices. Bildverarbeitung für die Medizin (2008)
Ulf-Dietrich Braumann, Jens Einenkel, Lars-Christian Horn, Jens-Peer Kuska, Markus Löffler, Nico Scherf, Nicolas Wentzensen
Registration of Histologic Colour Images of Different Staining. Bildverarbeitung für die Medizin (2006)
Jens-Peer Kuska, Ulf-Dietrich Braumann, Nico Scherf, Markus Löffler, Jens Einenkel, Michael Höckel, Lars-Christian Horn, Nicolas Wentzensen, Magnus von Knebel Doeberitz
Image Registration of Differently Stained Histological Sections. ICIP (2006)

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Publication Activity (10 Years)

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Nico Scherf