Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology.
Markus MorawskiEvgeniya KirilinaNico ScherfCarsten JägerKatja ReimannRobert TrampelFilippos GavriilidisStefan GeyerBernd BiedermannThomas ArendtNikolaus WeiskopfPublished in: NeuroImage (2018)
Keyphrases
- brain tissue
- magnetic resonance images
- mri data
- mr images
- automatic segmentation
- magnetic resonance imaging
- brain anatomy
- brain segmentation
- brain mr images
- white matter
- brain atlas
- skull stripping
- tissue segmentation
- brain tumors
- bias field
- medical images
- high resolution
- low contrast
- brain images
- magnetic resonance
- prostate cancer
- human subjects
- morphological operations
- image analysis
- decision making
- diffusion tensor
- region growing
- fully automatic
- synthetic data
- segmentation algorithm
- graph cuts
- intensity distribution
- medical image analysis
- partial volume
- image enhancement
- real world