Patryk Burek

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 16

Top Venues

KES

JOWO

J. Biomed. Semant.

Appl. Ontology

University of Leipzig (PHD)

Education History

University of Leipzig

PHD

Publications

Bärbel Hanle, Frank Loebe, Patryk Burek, Heinrich Herre
Balls and Universal Space in GFO. JOWO (2023)
Patryk Burek, Frank Loebe, Heinrich Herre
Ontology patterns for function modeling with GFO (short paper). ER (Companion) (2023)
Frank Loebe, Patryk Burek, Heinrich Herre
GFO: The General Formal Ontology. Appl. Ontology 17 (1) (2022)
Patryk Burek, Frank Loebe, Heinrich Herre
Overview of GFO 2.0 Functions: An ontology module for representing teleological knowledge. KES (2021)
Jakub Pastuszuk, Patryk Burek, Bogdan Ksiezopolski
Cybersecurity Ontology for Dynamic Analysis of IT Systems. KES (2021)
Frank Loebe, Patryk Burek, Heinrich Herre
Developing GFO 2.0 Further - Initiating the Modules of Space and Material Objects. JOWO (2021)
Patryk Burek, Heinrich Herre, Nico Scherf
On the Ontological Foundations of Cellular Development. JOWO (2020)
Adrian Stadnicki, Filip Filip Pietron, Patryk Burek
Towards a Modern Ontology Development Environment. KES (2020)
Patryk Burek, Nico Scherf, Heinrich Herre
On the Formal Representation and Annotation of Cellular Genealogies. EKAW (2020)
Patryk Burek, Heinrich Herre
A Lightweight Approach to the Multi-perspective Modeling of Processes and Objects. KES (2020)
Patryk Burek, Frank Loebe, Heinrich Herre
Towards GFO 2.0: Architecture, Modules and Applications. FOIS (2020)
Patryk Burek, Nico Scherf, Heinrich Herre
Foundations of the Cell Tracking Ontology. JOWO (2019)
Patryk Burek, Nico Scherf, Heinrich Herre
Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semant. 10 (1) (2019)
Patryk Burek, Nico Scherf, Heinrich Herre
A pattern-based approach to a cell tracking ontology. KES (2019)
Patryk Burek, Frank Loebe, Heinrich Herre
Towards refactoring the Molecular Function Ontology with a UML profile for function modeling. J. Biomed. Semant. 8 (1) (2017)
Patryk Burek, Frank Loebe, Heinrich Herre
FueL: Representing function structure and function dependencies with a UML profile for function modeling. Appl. Ontology 11 (2) (2016)
Patryk Burek, Frank Loebe, Heinrich Herre
A UML profile for functional modeling applied to the Molecular Function Ontology. ICBO (2015)
Alexandr Uciteli, Christoph Goller, Patryk Burek, Sebastian Siemoleit, Breno Faria, Halyna Galanzina, Timo Weiland, Doreen Drechsler-Hake, Wolfram Bartussek, Heinrich Herre
Search Ontology, a new approach towards Semantic Search. GI-Jahrestagung (2014)
Patryk Burek, Heinrich Herre
Representation, Realization, and Ascription of Functions for Material Entities. GI-Jahrestagung (2013)
Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder
Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking. Bildverarbeitung für die Medizin (2013)
Patryk Burek, Heinrich Herre, Frank Loebe
Ontological Analysis of Functional Decomposition. SoMeT (2009)
Patryk Burek, Robert Hoehndorf, Frank Loebe, Johann Visagie, Heinrich Herre, Janet Kelso
A top-level ontology of functions and its application in the Open Biomedical Ontologies. ISMB (Supplement of Bioinformatics) (2006)
Patryk Burek
Essentialized Conceptual Structures in Ontology Modeling. KES (2) (2005)
Patryk Burek, Rafal Grabos
Dually Structured Concepts in the Semantic Web: Answer Set Programming Approach. ESWC (2005)
Patryk Burek
Adoption of the Classical Theory of Definition to Ontology Modeling. AIMSA (2004)

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Publication Activity (10 Years)

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Patryk Burek