ISMB (Supplement of Bioinformatics)

Keyphrases

Publications

2008

Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008 ISMB (Supplement of Bioinformatics) (2008)

2006

Vinay Varadan, David M. Miller III, Dimitris Anastassiou
. ISMB (Supplement of Bioinformatics) (2006)
Fabrice Armougom, Sébastien Moretti, Vladimir Keduas, Cédric Notredame
The iRMSD: a local measure of sequence alignment accuracy using structural information. ISMB (Supplement of Bioinformatics) (2006)
Frank DiMaio, Jude W. Shavlik, George N. Phillips
A probabilistic approach to protein backbone tracing in electron density maps. ISMB (Supplement of Bioinformatics) (2006)
Iris Antes, Shirley W. I. Siu, Thomas Lengauer
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. ISMB (Supplement of Bioinformatics) (2006)
Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu
Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) (2006)
Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp
Distance based algorithms for small biomolecule classification and structural similarity search. ISMB (Supplement of Bioinformatics) (2006)
Jana Hertel, Peter F. Stadler
Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data. ISMB (Supplement of Bioinformatics) (2006)
Chuong B. Do, Daniel A. Woods, Serafim Batzoglou
CONTRAfold: RNA secondary structure prediction without physics-based models. ISMB (Supplement of Bioinformatics) (2006)
Firas Khatib, Matthew T. Weirauch, Carol A. Rohl
Rapid knot detection and application to protein structure prediction. ISMB (Supplement of Bioinformatics) (2006)
Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa
ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. ISMB (Supplement of Bioinformatics) (2006)
Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) (2006)
Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) (2006)
Hagit Shatkay, Nawei Chen, Dorothea Blostein
Integrating image data into biomedical text categorization. ISMB (Supplement of Bioinformatics) (2006)
Gorka Lasso, John F. Antoniw, Jonathan G. L. Mullins
A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops. ISMB (Supplement of Bioinformatics) (2006)
Tien-ho Lin, Eugene W. Myers, Eric P. Xing
Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. ISMB (Supplement of Bioinformatics) (2006)
Giovanni Bottegoni, Walter Rocchia, Maurizio Recanatini, Andrea Cavalli
AClAP, Autonomous hierarchical agglomerative Cluster Analysis based protocol to partition conformational datasets. ISMB (Supplement of Bioinformatics) (2006)
Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, Fengzhu Sun
An integrative approach for causal gene identification and gene regulatory pathway inference. ISMB (Supplement of Bioinformatics) (2006)
Nir Yosef, Alon Kaufman, Eytan Ruppin
Inferring Functional Pathways from Multi-Perturbation Data. ISMB (Supplement of Bioinformatics) (2006)
Leelavati Narlikar, Raluca Gordân, Uwe Ohler, Alexander J. Hartemink
motif discovery. ISMB (Supplement of Bioinformatics) (2006)
Karsten M. Borgwardt, Arthur Gretton, Malte J. Rasch, Hans-Peter Kriegel, Bernhard Schölkopf, Alexander J. Smola
Integrating structured biological data by Kernel Maximum Mean Discrepancy. ISMB (Supplement of Bioinformatics) (2006)
Denise Y. F. Mak, Yevgeniy Gelfand, Gary Benson
Indel seeds for homology search. ISMB (Supplement of Bioinformatics) (2006)
Sitaram Asur, Pichai Raman, Matthew Eric Otey, Srinivasan Parthasarathy
A model-based approach for mining membrane protein crystallization trials. ISMB (Supplement of Bioinformatics) (2006)
Geoffrey Koh, Huey Fern Carol Teong, Marie-Véronique Clément, David Hsu, P. S. Thiagarajan
A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk. ISMB (Supplement of Bioinformatics) (2006)
Yong Lu, Ronald Rosenfeld, Ziv Bar-Joseph
Identifying cycling genes by combining sequence homology and expression data. ISMB (Supplement of Bioinformatics) (2006)
Bruno Contreras-Moreira, Julio Collado-Vides
Comparative footprinting of DNA-binding proteins. ISMB (Supplement of Bioinformatics) (2006)
Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou
MotifCut: regulatory motifs finding with maximum density subgraphs. ISMB (Supplement of Bioinformatics) (2006)
Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy
Integrating copy number polymorphisms into array CGH analysis using a robust HMM. ISMB (Supplement of Bioinformatics) (2006)
Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) (2006)
Haixu Tang, Randy J. Arnold, Pedro Alves, Zhiyin Xun, David E. Clemmer, Milos V. Novotny, James P. Reilly, Predrag Radivojac
A computational approach toward label-free protein quantification using predicted peptide detectability. ISMB (Supplement of Bioinformatics) (2006)
Fabien P. E. Huard, Charlotte M. Deane, Graham R. Wood
Modelling sequential protein folding under kinetic control. ISMB (Supplement of Bioinformatics) (2006)
ISMB 2006 Organization. ISMB (Supplement of Bioinformatics) (2006)
Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna
A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. ISMB (Supplement of Bioinformatics) (2006)
Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer
Automatic clustering of orthologs and inparalogs shared by multiple proteomes. ISMB (Supplement of Bioinformatics) (2006)
Nebojsa Jojic, Manuel Reyes-Gomez, David Heckerman, Carl Myers Kadie, Ora Schueler-Furman
Learning MHC I - peptide binding. ISMB (Supplement of Bioinformatics) (2006)
Tobias P. Mann, William Stafford Noble
Efficient identification of DNA hybridization partners in a sequence database. ISMB (Supplement of Bioinformatics) (2006)
Erik Granseth, Håkan Viklund, Arne Elofsson
ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. ISMB (Supplement of Bioinformatics) (2006)
Neil C. Jones, Pavel A. Pevzner
Comparative genomics reveals unusually long motifs in mammalian genomes. ISMB (Supplement of Bioinformatics) (2006)
Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. ISMB (Supplement of Bioinformatics) (2006)
Philip E. Bourne, Søren Brunak
ISMB 2006. ISMB (Supplement of Bioinformatics) (2006)
Pinglang Wang, Manhong Dai, Weijian Xuan, Richard C. McEachin, Anne U. Jackson, Laura J. Scott, Brian D. Athey, Stanley J. Watson, Fan Meng
SNP Function Portal: a web database for exploring the function implication of SNP alleles. ISMB (Supplement of Bioinformatics) (2006)
Reuma Magori-Cohen, Yoram Louzoun, Steven H. Kleinstein
Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees. ISMB (Supplement of Bioinformatics) (2006)
Bernd Fischer, Jonas Grossmann, Volker Roth, Wilhelm Gruissem, Sacha Baginsky, Joachim M. Buhmann
Semi-supervised LC/MS alignment for differential proteomics. ISMB (Supplement of Bioinformatics) (2006)
Saurabh Sinha
On counting position weight matrix matches in a sequence, with application to discriminative motif finding. ISMB (Supplement of Bioinformatics) (2006)
Alexander Schliep, Sven Rahmann
Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. ISMB (Supplement of Bioinformatics) (2006)
Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost
Create and assess protein networks through molecular characteristics of individual proteins. ISMB (Supplement of Bioinformatics) (2006)
Hong Yu, Minsuk Lee
Accessing bioscience images from abstract sentences. ISMB (Supplement of Bioinformatics) (2006)
Elena J. Edelman, Alessandro Porrello, Justin Guinney, Bala Balakumaran, Andrea Bild, Phillip G. Febbo, Sayan Mukherjee
Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. ISMB (Supplement of Bioinformatics) (2006)
Larisa N. Soldatova, Amanda Clare, Andrew Sparkes, Ross D. King
An ontology for a Robot Scientist. ISMB (Supplement of Bioinformatics) (2006)
Phil Hyoun Lee, Hagit Shatkay
BNTagger: improved tagging SNP selection using Bayesian networks. ISMB (Supplement of Bioinformatics) (2006)