Robert Hoehndorf

ORCID

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 89

Top Venues

University of Leipzig (PHD)

Education History

University of Leipzig

PHD

Publications

Fernando Zhapa-Camacho, Robert Hoehndorf
From axioms over graphs to vectors, and back again: evaluating the properties of graph-based ontology embeddings. CoRR (2023)
Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153 (2023)
Fernando Zhapa-Camacho, Robert Hoehndorf
From Axioms over Graphs to Vectors, and Back Again: Evaluating the Properties of Graph-based Ontology Embeddings. NeSy (2023)
Sumyyah Toonsi, Senay Kafkas, Robert Hoehndorf
Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition. ICBO (2023)
Fernando Zhapa-Camacho, Robert Hoehndorf
Evaluating Different Methods for Semantic Reasoning Over Ontologies. QALD/SemREC@ISWC (2023)
Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS (2023)
Sarah M. Alghamdi, Robert Hoehndorf
Improving the classification of cardinality phenotypes using collections. J. Biomed. Semant. 14 (1) (2023)
Md Nurul Muttakin, Malik Shahid Sultan, Robert Hoehndorf, Hernando Ombao
Stylized Projected GAN: A Novel Architecture for Fast and Realistic Image Generation. CoRR (2023)
Zhenwei Tang, Shichao Pei, Xi Peng, Fuzhen Zhuang, Xiangliang Zhang, Robert Hoehndorf
Neural Multi-hop Logical Query Answering with Concept-Level Answers. ISWC (2023)
Lars Vogt, Tobias Kuhn, Robert Hoehndorf
Semantic Units: Organizing knowledge graphs into semantically meaningful units of representation. CoRR (2023)
Fernando Zhapa-Camacho, Maxat Kulmanov, Robert Hoehndorf
mOWL: Python library for machine learning with biomedical ontologies. Bioinform. 39 (1) (2023)
Fernando Zhapa-Camacho, Robert Hoehndorf
CatE: Embedding ALC ontologies using category-theoretical semantics. CoRR (2023)
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR (2023)
Senay Kafkas, Marwa Abdelhakim, Mahmut Uludag, Azza Althagafi, Malak Alghamdi, Robert Hoehndorf
Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes. BMC Bioinform. 24 (1) (2023)
Zhenwei Tang, Shichao Pei, Zhao Zhang, Yongchun Zhu, Fuzhen Zhuang, Robert Hoehndorf, Xiangliang Zhang
Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completion. CoRR (2022)
Zhenwei Tang, Shichao Pei, Xi Peng, Fuzhen Zhuang, Xiangliang Zhang, Robert Hoehndorf
Joint Abductive and Inductive Neural Logical Reasoning. CoRR (2022)
Luke T. Slater, Sophie Russell, Silver Makepeace, Alexander Carberry, Andreas Karwath, John A. Williams, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Evaluating semantic similarity methods for comparison of text-derived phenotype profiles. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13 (1) (2022)
Zhenwei Tang, Shichao Pei, Zhao Zhang, Yongchun Zhu, Fuzhen Zhuang, Robert Hoehndorf, Xiangliang Zhang
Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completion. IJCAI (2022)
Ali Syed, Senay Kafkas, Maxat Kulmanov, Robert Hoehndorf
Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase. SWAT4HCLS (2022)
Xi Peng, Zhenwei Tang, Maxat Kulmanov, Kexin Niu, Robert Hoehndorf
Description Logic EL++ Embeddings with Intersectional Closure. CoRR (2022)
Zhenwei Tang, Tilman Hinnerichs, Xi Peng, Xiangliang Zhang, Robert Hoehndorf
FALCON: Sound and Complete Neural Semantic Entailment over ALC Ontologies. CoRR (2022)
Sarah M. Alghamdi, Fernando Zhapa-Camacho, Robert Hoehndorf
A-LIOn - alignment learning through inconsistency negatives of the aligned ontologies. OM@ISWC (2022)
Azza Althagafi, Lamia Alsubaie, Nagarajan Kathiresan, Katsuhiko Mineta, Taghrid Aloraini, Fuad Al Mutairi, Majid Alfadhel, Takashi Gojobori, Ahmad Alfares, Robert Hoehndorf
DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning. Bioinform. 38 (6) (2022)
Luke T. Slater, Andreas Karwath, Robert Hoehndorf, Georgios V. Gkoutos
Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity. Frontiers Digit. Health 3 (2021)
Maxat Kulmanov, Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
Semantic similarity and machine learning with ontologies. Briefings Bioinform. 22 (4) (2021)
Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138 (2021)
Wang Liu-Wei, Senay Kafkas, Jun Chen, Nicholas J. Dimonaco, Jesper Tegnér, Robert Hoehndorf
DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes. Bioinform. 37 (17) (2021)
Tilman Hinnerichs, Robert Hoehndorf
DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions. Bioinform. 37 (24) (2021)
Jun Chen, Azza Althagafi, Robert Hoehndorf
Predicting candidate genes from phenotypes, functions and anatomical site of expression. Bioinform. 37 (6) (2021)
Maxat Kulmanov, Robert Hoehndorf
DeepGOPlus: improved protein function prediction from sequence. Bioinform. 37 (8) (2021)
Luke T. Slater, Andreas Karwath, John A. Williams, Sophie Russell, Silver Makepeace, Alexander Carberry, Robert Hoehndorf, Georgios V. Gkoutos
Towards similarity-based differential diagnostics for common diseases. Comput. Biol. Medicine 133 (2021)
Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12 (1) (2021)
Luke T. Slater, William Bradlow, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Improved characterisation of clinical text through ontology-based vocabulary expansion. J. Biomed. Semant. 12 (1) (2021)
Luke T. Slater, William Bradlow, Dino FA. Motti, Robert Hoehndorf, Simon Ball, Georgios V. Gkoutos
A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text. Comput. Biol. Medicine 130 (2021)
Maxat Kulmanov, Fernando Zhapa-Camacho, Robert Hoehndorf
DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Luke T. Slater, Georgios V. Gkoutos, Robert Hoehndorf
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. BMC Medical Informatics Decis. Mak. (10) (2020)
Maxat Kulmanov, Robert Hoehndorf
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. PLoS Comput. Biol. 16 (11) (2020)
Maxat Kulmanov, Robert Hoehndorf
DeepGOPlus: improved protein function prediction from sequence. Bioinform. 36 (2) (2020)
Sara Althubaiti, Senay Kafkas, Marwa Abdelhakim, Robert Hoehndorf
Combining lexical and context features for automatic ontology extension. J. Biomed. Semant. 11 (1) (2020)
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. Bioinform. 36 (7) (2020)
Jun Chen, Robert Hoehndorf, Mohamed Elhoseiny, Xiangliang Zhang
Efficient long-distance relation extraction with DG-SpanBERT. CoRR (2020)
Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20 (1) (2019)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Shichao Pei, Lu Yu, Robert Hoehndorf, Xiangliang Zhang
Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference. WWW (2019)
Senay Kafkas, Robert Hoehndorf
Ontology based mining of pathogen-disease associations from literature. J. Biomed. Semant. 10 (1) (2019)
Maxat Kulmanov, Wang Liu-Wei, Yuan Yan, Robert Hoehndorf
EL Embeddings: Geometric construction of models for the Description Logic EL ++. CoRR (2019)
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. Bioinform. 35 (12) (2019)
Maxat Kulmanov, Wang Liu-Wei, Yuan Yan, Robert Hoehndorf
EL Embeddings: Geometric Construction of Models for the Description Logic EL++. IJCAI (2019)
Senay Kafkas, Robert Hoehndorf
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. Database J. Biol. Databases Curation 2019 (2019)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 19 (1) (2018)
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. CoRR (2018)
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. CoRR (2018)
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. Bioinform. 34 (13) (2018)
Miguel Ángel Rodríguez-García, Robert Hoehndorf
Inferring ontology graph structures using OWL reasoning. BMC Bioinform. 19 (1) (2018)
Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS (2018)
Mona Alshahrani, Robert Hoehndorf
Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. Bioinform. 34 (17) (2018)
Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19 (5) (2018)
Maxat Kulmanov, Mohammad Asif Khan, Robert Hoehndorf
DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier. Bioinform. 34 (4) (2018)
Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34 (17) (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 18 (5) (2017)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8 (1) (2017)
Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13 (4) (2017)
Robert Hoehndorf, Núria Queralt-Rosinach
Data Science and symbolic AI: Synergies, challenges and opportunities. Data Sci. 1 (1-2) (2017)
Maxat Kulmanov, Robert Hoehndorf
Evaluating the effect of annotation size on measures of semantic similarity. J. Biomed. Semant. 8 (1) (2017)
Senay Kafkas, Sirarat Sarntivijai, Robert Hoehndorf
Usage of cell nomenclature in biomedical literature. BMC Bioinform. 18 (S-17) (2017)
Mona Alshahrani, Mohammad Asif Khan, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf
Neuro-symbolic representation learning on biological knowledge graphs. Bioinform. 33 (17) (2017)
Maxat Kulmanov, Mohammad Asif Khan, Robert Hoehndorf
DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier. CoRR (2017)
Mona Alshahrani, Mohammad Asif Khan, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf
Neuro-symbolic representation learning on biological knowledge graphs. CoRR (2016)
Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul Jean Pierre Bonnal, Robert M. Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. J. Biomed. Semant. 7 (2016)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. OM@ISWC (2016)
Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Updates to the AberOWL Ontology Repository. ICBO/BioCreative (2016)
Claus Weiland, Robert Hoehndorf, George Gosline, Quentin Groom, Thomas Hamann, Marco Schmidt
FLOPO - An Ontology for the Integration of Trait Data from Digitized Floras and Plant Image Collections. SWAT4LS (2016)
Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao
FoodON: A Global Farm-to-Fork Food Ontology. ICBO/BioCreative (2016)
Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative (2016)
Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS (2016)
Adil Salhi, Magbubah Essack, Aleksandar Radovanovic, Benoit Marchand, Salim Bougouffa, André Antunes, Marta Filipa Simões, Feras F. Lafi, Olaa A. Motwalli, Ameerah Bokhari, Tariq Malas, Soha Al Amoudi, Ghofran Othum, Intikhab Alam, Katsuhiko Mineta, Xin Gao, Robert Hoehndorf, John A. C. Archer, Takashi Gojobori, Vladimir B. Bajic
DESM: portal for microbial knowledge exploration systems. Nucleic Acids Res. 44 (Database-Issue) (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7 (2016)
Mona Alshahrani, Hussein Almashouq, Robert Hoehndorf
SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL. ICBO/BioCreative (2016)
Robert Hoehndorf, Mona Alshahrani, Georgios V. Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt, Soraya Sierra, Erik Smets, Rutger A. Vos, Claus Weiland
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO (2015)
Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Visualising Ontologies with AberOWL. SWAT4LS (2015)
Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6 (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16 (2015)
Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED (2015)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
AberOWL: an ontology portal with OWL EL reasoning. ICBO (2015)
Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16 (6) (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. CoRR (2014)
Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier
Mouse model phenotypes provide information about human drug targets. Bioinform. 30 (5) (2014)
Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5 (2014)
Robert Hoehndorf, Dietrich Rebholz-Schuhmann, Melissa A. Haendel, Robert Stevens
Thematic series on biomedical ontologies in JBMS: challenges and new directions. J. Biomed. Semant. 5 (2014)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS (2014)
Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Chen Li, Antonio Jimeno-Yepes, Robert Hoehndorf, Rolf Backofen, Ian Lewin
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. J. Biomed. Semant. 4 (2013)
Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
Evaluation of research in biomedical ontologies. Briefings Bioinform. 14 (6) (2013)
Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari
Representing physiological processes and their participants with PhysioMaps. J. Biomed. Semant. 4 (S-1) (2013)
Georgios V. Gkoutos, Robert Hoehndorf
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J. Biomed. Semant. 3 (S-2) (2012)
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing (2012)
Simon Jupp, Robert Stevens, Robert Hoehndorf
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL. J. Biomed. Semant. 3 (S-1) (2012)

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Robert Hoehndorf