Christopher J. O. Baker

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 11

Top Topics

Change Management

Biomedical Images

Top Venues

J. Biomed. Semant.

Publications

Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft
Perspectives on automated composition of workflows in the life sciences. F1000Research 10 (2021)
Anil Adisesh, Hongchang Bao, Mohammad Sadnan Al Manir, Christopher J. O. Baker
A Working Semantic Model for the Integration of Occupation, Function and Health. SWAT4HCLS (2019)
Mohammad Sadnan Al Manir, Jon Haël Brenas, Christopher J. O. Baker, Arash Shaban-Nejad
A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability. CoRR (2019)
Jon Haël Brenas, Mohammad Sadnan Al Manir, Kate Zinszer, Christopher J. O. Baker, Arash Shaban-Nejad
Exploring Semantic Data Federation to Enable Malaria Surveillance Queries. MIE (2018)
Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie, Christopher J. O. Baker
Design of a framework to support reuse of Open Data about agriculture. SWAT4LS (2018)
Mohammad Sadnan Al Manir, Bruce Spencer, Christopher J. O. Baker
Decision Support for Agricultural Consultants With Semantic Data Federation. Int. J. Agric. Environ. Inf. Syst. 9 (3) (2018)
Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad
A Malaria Analytics Framework to Support Evolution and Interoperability of Global Health Surveillance Systems. IEEE Access 5 (2017)
Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad
A Change Management Dashboard for the SIEMA Global Malaria Surveillance Infrastructure. ISWC (Posters, Demos & Industry Tracks) (2017)
Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
Automated generation of SADI semantic web services for clinical intelligence. SBD@SIGMOD (2016)
Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
Valet SADI: Provisioning SADI Web Services for Semantic Querying of Relational Databases. IDEAS (2016)
Arash Shaban-Nejad, Hiroshi Mamiya, Alexandre Riazanov, Alan J. Forster, Christopher J. O. Baker, Robyn Tamblyn, David L. Buckeridge
From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections. J. Medical Syst. 40 (1) (2016)
Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
Automated Generation of SADI Web Services for Clinical Intelligence using Ruled-Based Semantic Mappings. SWAT4LS (2015)
Syed Ahmad Chan Bukhari, Mate Levente Nagy, Paolo Ciccarese, Michael Krauthammer, Christopher J. O. Baker
iCyrus: A Semantic Framework for Biomedical Image Discovery. SWAT4LS (2015)
Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker
BIM: an open ontology for the annotation of biomedical images. ICBO (2015)
Mohammad Sadnan Al Manir, Christopher J. O. Baker
Offshore Holdings Analytics Using Datalog+ RuleML Rules. Challenge+DC@RuleML (2014)
Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker
Benchmarking infrastructure for mutation text mining. J. Biomed. Semant. 5 (2014)
Syed Ahmad Chan Bukhari, Michael Krauthammer, Christopher J. O. Baker
SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment. SWAT4LS (2014)
Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5 (2014)
Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker
Generating Semantic Web Services from Declarative Descriptions. CSWS (2013)
Alexandre Riazanov, Artjom Klein, Arash Shaban-Nejad, Gregory W. Rose, Alan J. Forster, David L. Buckeridge, Christopher J. O. Baker
Semantic querying of relational data for clinical intelligence: a semantic web services-based approach. J. Biomed. Semant. 4 (2013)
Ahmad C. Bukhari, Artjom Klein, Christopher J. O. Baker
Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework. DILS (2013)
Arash Shaban-Nejad, Alexandre Riazanov, Katia M. L. Charland, Gregory W. Rose, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge
HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections. ANT/MobiWIS (2012)
Alexandre Riazanov, Matthew M. Hindle, E. Scott Goudreau, Chris Martyniuk, Christopher J. O. Baker
Ecotoxicology Data Federation with SADI Semantic Web Services. SWAT4LS (2012)
Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker
PSOA RuleML API: A Tool for Processing Abstract and Concrete Syntaxes. RuleML (2012)
Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker
Benchmarking infrastructure for mutation text mining. AIMM (2012)
Arash Shaban-Nejad, Gregory W. Rose, Anya Okhmatovskaia, Alexandre Riazanov, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge
Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection. MIE (2011)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2 (S-5) (2011)
Christopher J. O. Baker, Rajaraman Kanagasabai
Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information. AINA (2011)
Matthew M. Hindle, Alexandre Riazanov, Edward S. Goudreau, Christopher J. Martyniuk, Christopher J. O. Baker
Leveraging SADI Semantic Web Services to Exploit Fish Ecotoxicology Data. CSWS (2011)
Alexandre Riazanov, Jonas Laurila Bergman, Christopher J. O. Baker
Deploying mutation impact text-mining software with the SADI Semantic Web Services framework. BMC Bioinform. 12 (S-4) (2011)
Alexandre Kouznetsov, Jonas B. Laurila, Christopher J. O. Baker, Bradley Shoebottom
Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation. AINA Workshops (2011)
Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker
Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinform. 12 (2011)
Alexandre Riazanov, Gregory W. Rose, Artjom Klein, Alan J. Forster, Christopher J. O. Baker, Arash Shaban-Nejad, David L. Buckeridge
Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data. SWAT4LS (2011)
Nona Naderi, Thomas Kappler, Christopher J. O. Baker, René Witte
OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. Bioinform. 27 (19) (2011)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine (2010)
Jonas Laurila Bergman, Rajaraman Kanagasabai, Christopher J. O. Baker
Algorithm for Grounding Mutation Mentions from Text to Protein Sequences. DILS (2010)
Alexandre Kouznetsov, Bradley Shoebottom, René Witte, Christopher J. O. Baker
Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support. OWLED (2010)
Christopher J. O. Baker, Dietrich Rebholz-Schuhmann
Between proteins and phenotypes: annotation and interpretation of mutations. BMC Bioinform. 10 (S-8) (2009)
Christopher J. O. Baker, Patrick Lambrix, Jonas Laurila Bergman, Kanagasabai Rajaraman, Wee Tiong Ang
Slicing through the Scientific Literature. DILS (2009)
Wee Tiong Ang, Rajaraman Kanagasabai, Christopher J. O. Baker
Knowledge Translation: Computing the Query Potential of Bio-ontologies. SWAT4LS (2008)
Menaka Rajapakse, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Mark J. Schreiber, Christopher J. O. Baker
Ontology-centric integration and navigation of the dengue literature. J. Biomed. Informatics 41 (5) (2008)
Donald J. Patterson, Christopher J. O. Baker, Xianghua Ding, Samuel J. Kaufman, Kah Liu, Andrew Zaldivar
Online everywhere: evolving mobile instant messaging practices. UbiComp (2008)
Jian Su, Christopher J. O. Baker
The Second International Symposium on Languages in Biology and Medicine (LBM) 2007. BMC Bioinform. 9 (S-3) (2008)
Christopher J. O. Baker, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Hong Sang Low, Markus R. Wenk
. BMC Bioinform. 9 (S-1) (2008)
Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker
A Workflow for Mutation Extraction and Structure Annotation. J. Bioinform. Comput. Biol. 5 (6) (2007)
René Witte, Thomas Kappler, Christopher J. O. Baker
Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. Int. J. Bioinform. Res. Appl. 3 (3) (2007)
Kanagasabai Rajaraman, Hong Sang Low, Wee Tiong Ang, Anitha Veeramani, Markus R. Wenk, Christopher J. O. Baker
Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics. FIRST (2007)
René Witte, Christopher J. O. Baker
Towards a Systematic Evaluation of protein Mutation Extraction Systems. J. Bioinform. Comput. Biol. 5 (6) (2007)
Christopher J. O. Baker, Arash Shaban-Nejad, Xiao Su, Volker Haarslev, Greg Butler
Semantic web infrastructure for fungal enzyme biotechnologists. J. Web Semant. 4 (3) (2006)
Christopher J. O. Baker, Xiao Su, Greg Butler, Volker Haarslev
Ontoligent Interactive Query Tool. CSWWS (2006)
Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler
Using Selectional Restrictions to Query an OWL Ontology. FOIS (2006)
Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker
A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. CSWWS (2006)
Christopher J. O. Baker, René Witte
Mutation Mining-A Prospector's Tale. Inf. Syst. Frontiers 8 (1) (2006)
Arash Shaban-Nejad, Christopher J. O. Baker, Volker Haarslev, Greg Butler
The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics. ISWC (2005)
René Witte, Christopher J. O. Baker
Combining Biological Databases and Text Mining to Support New Bioinformatics Applications. NLDB (2005)