Ekaterina Buyko

Publication Activity (10 Years)

Years Active: 2007-2012
Publications (10 Years): 0

Top Topics

Inter Annotator Agreement

Active Learning

Iterative Refinement

Top Venues

Pacific Symposium on Biocomputing

Publications

Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler, Jenny Traumüller, Susann Schröder, Kerstin Hornbostel
Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena. LREC (2012)
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler
Active Learning-Based Corpus Annotation - The PathoJen Experience. AMIA (2012)
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB. Pacific Symposium on Biocomputing (2012)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2 (S-5) (2011)
Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn
Syntactic Simplification and Semantic Enrichment - Trimming Dependency Graphs for Event Extraction. Comput. Intell. 27 (4) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Ekaterina Buyko, Udo Hahn
Generating Semantics for the Life Sciences via Text Analytics. ICSC (2011)
Ekaterina Buyko, Jörg Linde, Steffen Priebe, Udo Hahn
Towards Automatic Pathway Generation from Biological Full-Text Publications. IDA (2011)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine (2010)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn
Calbc Silver Standard Corpus. J. Bioinform. Comput. Biol. 8 (1) (2010)
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability. LREC (2010)
Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn
The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. LREC (2010)
Ekaterina Buyko, Udo Hahn
Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks. EMNLP (2010)
Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn
Event Extraction from Trimmed Dependency Graphs. BioNLP@HLT-NAACL (Shared Task) (2009)
Udo Hahn, Katrin Tomanek, Ekaterina Buyko, Jung-jae Kim, Dietrich Rebholz-Schuhmann
How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions. BioNLP@HLT-NAACL (2009)
Ekaterina Buyko, Udo Hahn
Are Morpho-Syntactic Features More Predictive for the Resolution of Noun Phrase Coordination Ambiguity than Lexico-Semantic Similarity Scores? COLING (2008)
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Michael Poprat, Katrin Tomanek, Joachim Wermter
Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab. LREC (2008)
Ekaterina Buyko, Christian Chiarcos, Antonio Pareja-Lora
Ontology-Based Interface Specifications for a NLP Pipeline Architecture. LREC (2008)
Udo Hahn, Ekaterina Buyko, Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, Sophia Ananiadou
An Annotation Type System for a Data-Driven NLP Pipeline. LAW@ACL (2007)