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BioNLP@HLT-NAACL
2009
2010
2011
2012
2009
2012
Keyphrases
Publications
2012
Sampo Pyysalo
,
Pontus Stenetorp
,
Tomoko Ohta
,
Jin-Dong Kim
,
Sophia Ananiadou
New Resources and Perspectives for Biomedical Event Extraction.
BioNLP@HLT-NAACL
(2012)
James Cogley
,
Nicola Stokes
,
Joe Carthy
,
John Dunnion
Analyzing Patient Records to Establish If and When a Patient Suffered from a Medical Condition.
BioNLP@HLT-NAACL
(2012)
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012
BioNLP@HLT-NAACL
(2012)
Dana Movshovitz-Attias
,
William W. Cohen
Alignment-HMM-based Extraction of Abbreviations from Biomedical Text.
BioNLP@HLT-NAACL
(2012)
Emilia Apostolova
,
Noriko Tomuro
,
Pattanasak Mongkolwat
,
Dina Demner-Fushman
Domain Adaptation of Coreference Resolution for Radiology Reports.
BioNLP@HLT-NAACL
(2012)
Yue Wang
,
Jin-Dong Kim
Boosting the protein name recognition performance by bootstrapping on selected text.
BioNLP@HLT-NAACL
(2012)
Jin-Dong Kim
,
Yue Wang
PubAnnotation - a persistent and sharable corpus and annotation repository.
BioNLP@HLT-NAACL
(2012)
Dana Movshovitz-Attias
,
William W. Cohen
Bootstrapping Biomedical Ontologies for Scientific Text using NELL.
BioNLP@HLT-NAACL
(2012)
Sun Kim
,
Won Kim
,
Donald C. Comeau
,
W. John Wilbur
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers.
BioNLP@HLT-NAACL
(2012)
Brett R. South
,
Shuying Shen
,
Jianwei Leng
,
Tyler Forbush
,
Scott L. DuVall
,
Wendy W. Chapman
A Prototype Tool Set to Support Machine-Assisted Annotation.
BioNLP@HLT-NAACL
(2012)
Danielle L. Mowery
,
Sumithra Velupillai
,
Wendy W. Chapman
Medical diagnosis lost in translation - Analysis of uncertainty and negation expressions in English and Swedish clinical texts.
BioNLP@HLT-NAACL
(2012)
Marie Dupuch
,
Laëtitia Dupuch
,
Thierry Hamon
,
Natalia Grabar
Semantic distance and terminology structuring methods for the detection of semantically close terms.
BioNLP@HLT-NAACL
(2012)
Richard Boyce
,
Gregory Gardner
,
Henk Harkema
Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts.
BioNLP@HLT-NAACL
(2012)
Binod Gyawali
,
Thamar Solorio
,
Yassine Benajiba
Grading the Quality of Medical Evidence.
BioNLP@HLT-NAACL
(2012)
Catalina O. Tudor
,
K. Vijay-Shanker
RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application.
BioNLP@HLT-NAACL
(2012)
Preethi Raghavan
,
Eric Fosler-Lussier
,
Albert M. Lai
Temporal Classification of Medical Events.
BioNLP@HLT-NAACL
(2012)
Thierry Hamon
,
Christopher Engström
,
Mounira Manser
,
Zina Badji
,
Natalia Grabar
,
Sergei Silvestrov
Combining Compositionality and Pagerank for the Identification of Semantic Relations between Biomedical Words.
BioNLP@HLT-NAACL
(2012)
Emily Prud'hommeaux
,
Brian Roark
Graph-based alignment of narratives for automated neurological assessment.
BioNLP@HLT-NAACL
(2012)
Óscar Ferrández
,
Brett R. South
,
Shuying Shen
,
Stéphane M. Meystre
A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents.
BioNLP@HLT-NAACL
(2012)
Nate Sutton
,
Laura Wojtulewicz
,
Neel Mehta
,
Graciela Gonzalez
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation.
BioNLP@HLT-NAACL
(2012)
Timothy A. Miller
,
Dmitriy Dligach
,
Guergana Savova
Active Learning for Coreference Resolution.
BioNLP@HLT-NAACL
(2012)
Rezarta Islamaj Dogan
,
Zhiyong Lu
An improved corpus of disease mentions in PubMed citations.
BioNLP@HLT-NAACL
(2012)
Ying Yan
,
Jee-Hyub Kim
,
Samuel Croset
,
Dietrich Rebholz-Schuhmann
Finding small molecule and protein pairs in scientific literature using a bootstrapping method.
BioNLP@HLT-NAACL
(2012)
Weiwei Cheng
,
Judita Preiss
,
Mark Stevenson
Scaling up WSD with Automatically Generated Examples.
BioNLP@HLT-NAACL
(2012)
Ramnath Balasubramanyan
,
Kathryn Rivard
,
William W. Cohen
,
Jelena Jakovljevic
,
John L. Woolford
Evaluating Joint Modeling of Yeast Biology Literature and Protein-Protein Interaction Networks.
BioNLP@HLT-NAACL
(2012)
Pawel Matykiewicz
,
John Pestian
Effect of small sample size on text categorization with support vector machines.
BioNLP@HLT-NAACL
(2012)
Yaqiang Wang
,
Yiguang Liu
,
Zhonghua Yu
,
Li Chen
,
Yongguang Jiang
A Preliminary Work on Symptom Name Recognition from Free-Text Clinical Records of Traditional Chinese Medicine using Conditional Random Fields and Reasonable Features.
BioNLP@HLT-NAACL
(2012)
Attapol Thamrongrattanarit
,
Michael Shafir
,
Michael Crivaro
,
Bensiin Borukhov
,
Marie Meteer
What can NLP tell us about BioNLP?
BioNLP@HLT-NAACL
(2012)
Jari Björne
,
Sofie Van Landeghem
,
Sampo Pyysalo
,
Tomoko Ohta
,
Filip Ginter
,
Yves Van de Peer
,
Sophia Ananiadou
,
Tapio Salakoski
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
BioNLP@HLT-NAACL
(2012)
Shefali Sharma
,
Leslie Lange
,
José Luis Ambite
,
Yigal Arens
,
Chun-Nan Hsu
Exploring Label Dependency in Active Learning for Phenotype Mapping.
BioNLP@HLT-NAACL
(2012)
Marie Meteer
,
Bensiin Borukhov
,
Mike Crivaro
,
Michael Shafir
,
Attapol Thamrongrattanarit
MedLingMap: A growing resource mapping the Bio-Medical NLP field.
BioNLP@HLT-NAACL
(2012)
2009
Udo Hahn
,
Katrin Tomanek
,
Ekaterina Buyko
,
Jung-jae Kim
,
Dietrich Rebholz-Schuhmann
How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions.
BioNLP@HLT-NAACL
(2009)
Feng Jin
,
Minlie Huang
,
Zhiyong Lu
,
Xiaoyan Zhu
Towards Automatic Generation of Gene Summary.
BioNLP@HLT-NAACL
(2009)
Eiji Aramaki
,
Yasuhide Miura
,
Masatsugu Tonoike
,
Tomoko Ohkuma
,
Hiroshi Mashuichi
,
Kazuhiko Ohe
TEXT2TABLE: Medical Text Summarization System Based on Named Entity Recognition and Modality Identification.
BioNLP@HLT-NAACL
(2009)
Pawel Matykiewicz
,
Wlodzislaw Duch
,
John Pestian
Clustering Semantic Spaces of Suicide Notes and Newsgroups Articles.
BioNLP@HLT-NAACL
(2009)
Annette Leonhard
Towards Retrieving Relevant Information for Answering Clinical Comparison Questions.
BioNLP@HLT-NAACL
(2009)
Lin Sun
,
Anna Korhonen
,
Ilona Silins
,
Ulla Stenius
User-Driven Development of Text Mining Resources for Cancer Risk Assessment.
BioNLP@HLT-NAACL
(2009)
Maria Liakata
,
Claire Q
,
Larisa N. Soldatova
Semantic Annotation of Papers: Interface & Enrichment Tool (SAPIENT).
BioNLP@HLT-NAACL
(2009)
Mark Stevenson
,
Yikun Guo
,
Abdulaziz Alamri
,
Robert J. Gaizauskas
Disambiguation of Biomedical Abbreviations.
BioNLP@HLT-NAACL
(2009)
Haibin Liu
,
Christian Blouin
,
Vlado Keselj
Identifying Interaction Sentences from Biological Literature Using Automatically Extracted Patterns.
BioNLP@HLT-NAACL
(2009)
Aurélie Névéol
,
Won Kim
,
W. John Wilbur
,
Zhiyong Lu
Exploring Two Biomedical Text Genres for Disease Recognition.
BioNLP@HLT-NAACL
(2009)
Danielle L. Mowery
,
Henk Harkema
,
John N. Dowling
,
Jonathan L. Lustgarten
,
Wendy W. Chapman
Distinguishing Historical from Current Problems in Clinical Reports - Which Textual Features Help?
BioNLP@HLT-NAACL
(2009)
Thomas Kappeler
,
Kaarel Kaljurand
,
Fabio Rinaldi
TX Task: Automatic Detection of Focus Organisms in Biomedical Publications.
BioNLP@HLT-NAACL
(2009)
Sampo Pyysalo
,
Tomoko Ohta
,
Jin-Dong Kim
,
Jun'ichi Tsujii
Static Relations: a Piece in the Biomedical Information Extraction Puzzle.
BioNLP@HLT-NAACL
(2009)
Sumire Uematsu
,
Jin-Dong Kim
,
Jun'ichi Tsujii
Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics.
BioNLP@HLT-NAACL
(2009)
Lee M. Christensen
,
Henk Harkema
,
Peter J. Haug
,
Jeannie Yuhaniak Irwin
,
Wendy W. Chapman
ONYX: A System for the Semantic Analysis of Clinical Text.
BioNLP@HLT-NAACL
(2009)
Rong Xu
,
Alexander A. Morgan
,
Amar K. Das
,
Alan M. Garber
Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon.
BioNLP@HLT-NAACL
(2009)
Esra Erdem
,
Reyyan Yeniterzi
Transforming Controlled Natural Language Biomedical Queries into Answer Set Programs.
BioNLP@HLT-NAACL
(2009)
Tomoko Ohta
,
Jin-Dong Kim
,
Sampo Pyysalo
,
Yue Wang
,
Jun'ichi Tsujii
Incorporating GENETAG-style annotation to GENIA corpus.
BioNLP@HLT-NAACL
(2009)
Mike Conway
,
Son Doan
,
Nigel Collier
Using Hedges to Enhance a Disease Outbreak Report Text Mining System.
BioNLP@HLT-NAACL
(2009)