W. John Wilbur

Publication Activity (10 Years)

Years Active: 1984-2024
Publications (10 Years): 29

Top Venues

Database J. Biol. Databases Curation

CoRR

Bioinform.

BMC Bioinform.

Publications

Qiao Jin, Zhizheng Wang, Yifan Yang, Qingqing Zhu, Donald Wright, Thomas Huang, W. John Wilbur, Zhe He, Andrew Taylor, Qingyu Chen, Zhiyong Lu
AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning. CoRR (2024)
Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval. CoRR (2023)
Robert Leaman, Rezarta Islamaj, Alexis Allot, Qingyu Chen, W. John Wilbur, Zhiyong Lu
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning. Patterns 4 (1) (2023)
Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval. Bioinform. 39 (10) (2023)
Robert Leaman, Rezarta Islamaj Dogan, Alexis Allot, Qingyu Chen, W. John Wilbur, Zhiyong Lu
Comprehensive identification of Long Covid articles with human-in-the-loop machine learning. CoRR (2022)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Towards a unified search: Improving PubMed retrieval with full text. J. Biomed. Informatics 134 (2022)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Measuring the relative importance of full text sections for information retrieval from scientific literature. BioNLP@NAACL-HLT (2021)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Improving PubMed Retrieval by Integrating Abstract and Full Text Search. AMIA (2021)
Lana Yeganova, Sun Kim, Qingyu Chen, Grigory Balasanov, W. John Wilbur, Zhiyong Lu
Better synonyms for enriching biomedical search. J. Am. Medical Informatics Assoc. 27 (12) (2020)
Lana Yeganova, Rezarta Islamaj Dogan, Qingyu Chen, Robert Leaman, Alexis Allot, Chih-Hsuan Wei, Donald C. Comeau, Won Kim, Yifan Peng, W. John Wilbur, Zhiyong Lu
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view. CoRR (2020)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. BMC Medical Informatics Decis. Mak. (1) (2020)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Evaluation of Five Sentence Similarity Models on Electronic Medical Records. BCB (2019)
Rezarta Islamaj Dogan, Lana Yeganova, Won Kim, Natalie Xie, W. John Wilbur
PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed. CoRR (2019)
Rezarta Islamaj Dogan, W. John Wilbur, Natalie Xie, Noreen R. Gonzales, Narmada Thanki, Roxanne A. Yamashita, Chanjuan Zheng, Aron Marchler-Bauer, Zhiyong Lu
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database. Database J. Biol. Databases Curation 2019 (2019)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. CoRR (2019)
Alexis Allot, Qingyu Chen, Sun Kim, Roberto Vera Alvarez, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
LitSense: making sense of biomedical literature at sentence level. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Qingyu Chen, Sun Kim, W. John Wilbur, Zhiyong Lu
Sentence Similarity Measures Revisited: Ranking Sentences in PubMed Documents. BCB (2018)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
A Field Sensor: computing the composition and intent of PubMed queries. Database J. Biol. Databases Curation 2018 (2018)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
MeSH-based dataset for measuring the relevance of text retrieval. BioNLP (2018)
Lana Yeganova, Sun Kim, Grigory Balasanov, W. John Wilbur
Discovering themes in biomedical literature using a projection-based algorithm. BMC Bioinform. 19 (1) (2018)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur, Zhiyong Lu
SingleCite: Towards an improved Single Citation Search in PubMed. BioNLP (2018)
Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, W. John Wilbur, Donald C. Comeau, Kara Dolinski, Mike Tyers
The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions. Database J. Biol. Databases Curation 2017 (2017)
Sun Kim, Nicolas Fiorini, W. John Wilbur, Zhiyong Lu
Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents. J. Biomed. Informatics 75 (2017)
Sun Kim, Lana Yeganova, W. John Wilbur
: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms. Bioinform. 32 (19) (2016)
Donald C. Comeau, Rezarta Islamaj Dogan, Sun Kim, Chih-Hsuan Wei, W. John Wilbur, Zhiyong Lu
BioCconvert: A Conversion Tool Between BioC and PubAnnotation. ICBO/BioCreative (2016)
Sun Kim, W. John Wilbur, Zhiyong Lu
Bridging the Gap: a Semantic Similarity Measure between Queries and Documents. CoRR (2016)
Soo-Yong Shin, Sun Kim, W. John Wilbur, Dongseop Kwon
BioC viewer: a web-based tool for displaying and merging annotations in BioC. Database J. Biol. Databases Curation 2016 (2016)
Lana Yeganova, Won Kim, Sun Kim, Rezarta Islamaj Dogan, Wanli Liu, Donald C. Comeau, Zhiyong Lu, W. John Wilbur
PubTermVariants: biomedical term variants and their use for PubMed search. BioNLP@ACL (2016)
Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016)
Sun Kim, Zhiyong Lu, W. John Wilbur
Identifying named entities from PubMed®; for enriching semantic categories. BMC Bioinform. 16 (2015)
Sun Kim, Lana Yeganova, W. John Wilbur
Summarizing Topical Contents from PubMed Documents Using a Thematic Analysis. EMNLP (2015)
Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew D. MacKinlay, W. John Wilbur
Optimizing graph-based patterns to extract biomedical events from the literature. BMC Bioinform. 16 (S16) (2015)
Sun Kim, Haibin Liu, Lana Yeganova, W. John Wilbur
Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach. J. Biomed. Informatics 55 (2015)
Cecilia N. Arighi, Cathy H. Wu, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, W. John Wilbur, Thomas C. Wiegers
BioCreative-IV virtual issue. Database J. Biol. Databases Curation 2014 (2014)
Dongseop Kwon, Sun Kim, Soo-Yong Shin, Andrew Chatr-aryamontri, W. John Wilbur
Assisting manual literature curation for protein-protein interactions using BioQRator. Database J. Biol. Databases Curation 2014 (2014)
Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014)
Rezarta Islamaj Dogan, Donald C. Comeau, Lana Yeganova, W. John Wilbur
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora. Database J. Biol. Databases Curation 2014 (2014)
Lana Yeganova, Won Kim, Sun Kim, W. John Wilbur
Retro: concept-based clustering of biomedical topical sets. Bioinform. 30 (22) (2014)
Wanli Liu, Rezarta Islamaj Dogan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau
BioC implementations in Go, Perl, Python and Ruby. Database J. Biol. Databases Curation 2014 (2014)
Wanli Liu, Rezarta Islamaj Dogan, Sun Kim, Donald C. Comeau, Won Kim, Lana Yeganova, Zhiyong Lu, W. John Wilbur
Author name disambiguation for PubMed. J. Assoc. Inf. Sci. Technol. 65 (4) (2014)
Sun Kim, Haibin Liu, Lana Yeganova, W. John Wilbur
Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach. AMIA (2014)
Donald C. Comeau, Haibin Liu, Rezarta Islamaj Dogan, W. John Wilbur
Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus. Database J. Biol. Databases Curation 2014 (2014)
W. John Wilbur, Won Kim
Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records. AMIA (2014)
Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. BioNLP@ACL (Shared Task) (2013)
Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation 2013 (2013)
Pontus Stenetorp, Wiktoria Golik, Thierry Hamon, Donald C. Comeau, Rezarta Islamaj Dogan, Haibin Liu, W. John Wilbur
BioNLP Shared Task 2013: Supporting Resources. BioNLP@ACL (Shared Task) (2013)
Donald C. Comeau, Rezarta Islamaj Dogan, W. John Wilbur
BioC: A Minimalist Approach to Interoperability for Biomedical Text Processing. AMIA (2013)
Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew MacKinlay, W. John Wilbur
Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics. BioNLP@ACL (Shared Task) (2013)
Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur
Identifying well-formed biomedical phrases in MEDLINE® text. J. Biomed. Informatics 45 (6) (2012)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur
. J. Biomed. Semant. 3 (S-3) (2012)
Sun Kim, Dongseop Kwon, Soo-Yong Shin, W. John Wilbur
: searching PubMed literature for protein interaction information. Bioinform. 28 (4) (2012)
Lana Yeganova, Vahan Grigoryan, Won Kim, W. John Wilbur
Automatic Identification of Key Concepts in Large PubMed Retrievals. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Aurélie Névéol, W. John Wilbur, Zhiyong Lu
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE. Database J. Biol. Databases Curation 2012 (2012)
Sun Kim, Won Kim, Chih-Hsuan Wei, Zhiyong Lu, W. John Wilbur
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information. Database J. Biol. Databases Curation 2012 (2012)
Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
BioCreative-2012 Virtual Issue. Database J. Biol. Databases Curation 2012 (2012)
Larry H. Smith, Won Kim, W. John Wilbur
PROBE: Periodic Random Orbiter Algorithm for Machine Learning. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Sun Kim, W. John Wilbur
Thematic clustering of text documents using an EM-based approach. J. Biomed. Semant. 3 (S-3) (2012)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40 (Database-Issue) (2012)
Sun Kim, Won Kim, Donald C. Comeau, W. John Wilbur
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers. BioNLP@HLT-NAACL (2012)
W. John Wilbur, Won Kim
Improving a gold standard: treating human relevance judgments of MEDLINE document pairs. BMC Bioinform. 12 (S-3) (2011)
Sun Kim, W. John Wilbur
Classifying protein-protein interaction articles using word and syntactic features. BMC Bioinform. 12 (S-8) (2011)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39 (Database-Issue) (2011)
Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Mateus Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. 12 (S-8) (2011)
Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu
Overview of the BioCreative III Workshop. BMC Bioinform. 12 (S-8) (2011)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur
Text Mining Techniques for Leveraging Positively Labeled Data. BioNLP@ACL (2011)
Aurélie Névéol, W. John Wilbur, Zhiyong Lu
Automatic extraction of data deposition statements: where do the research results go? BioNLP@ACL (2011)
Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur
The gene normalization task in BioCreative III. BMC Bioinform. 12 (S-8) (2011)
Lana Yeganova, Donald C. Comeau, W. John Wilbur
Machine learning with naturally labeled data for identifying abbreviation definitions. BMC Bioinform. 12 (S-3) (2011)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur
Comparison of Two Methods for Finding Biomedical Categories in Medline. ICMLA (2) (2011)
Aurélie Névéol, W. John Wilbur, Zhiyong Lu
Extraction of data deposition statements from the literature: a method for automatically tracking research results. Bioinform. 27 (23) (2011)
Sun Kim, W. John Wilbur
An EM Clustering Algorithm which Produces a Dual Representation. ICMLA (2) (2011)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38 (Database-Issue) (2010)
Larry H. Smith, W. John Wilbur
Finding related sentence pairs in MEDLINE. Inf. Retr. 13 (6) (2010)
Lana Yeganova, Donald C. Comeau, W. John Wilbur
Identifying Abbreviation Definitions Machine Learning with Naturally Labeled Data. ICMLA (2010)
Won Kim, W. John Wilbur
Improving a Gold Standard: Treating Human Relevance Judgments of MEDLINE Document Pairs. ICMLA (2010)
Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur
How to Get the Most out of Your Curation Effort. PLoS Comput. Biol. 5 (5) (2009)
Zhiyong Lu, Won Kim, W. John Wilbur
Viewpoint Paper: Evaluating Relevance Ranking Strategies for MEDLINE Retrieval. J. Am. Medical Informatics Assoc. 16 (1) (2009)
G. Craig Murray, Jimmy Lin, W. John Wilbur, Zhiyong Lu
Users' adjustments to unsuccessful queries in biomedical search. JCDL (2009)
Lawrence H. Smith, W. John Wilbur
The value of parsing as feature generation for gene mention recognition. J. Biomed. Informatics 42 (5) (2009)
Zhiyong Lu, Natalie Xie, W. John Wilbur
Identifying related journals through log analysis. Bioinform. 25 (22) (2009)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur
How to interpret PubMed queries and why it matters. J. Assoc. Inf. Sci. Technol. 60 (2) (2009)
Zhiyong Lu, W. John Wilbur
Improving accuracy for identifying related PubMed queries by an integrated approach. J. Biomed. Informatics 42 (5) (2009)
Zhiyong Lu, W. John Wilbur, Johanna R. McEntyre, Alexey Iskhakov, Lee Szilagyi
Finding Query Suggestions for PubMed. AMIA (2009)
Jimmy Lin, W. John Wilbur
-gram language models. Inf. Retr. 12 (4) (2009)
Zhiyong Lu, Won Kim, W. John Wilbur
Evaluation of query expansion using MeSH in PubMed. Inf. Retr. 12 (1) (2009)
Aurélie Névéol, Won Kim, W. John Wilbur, Zhiyong Lu
Exploring Two Biomedical Text Genres for Disease Recognition. BioNLP@HLT-NAACL (2009)
W. John Wilbur, Won Kim
The ineffectiveness of within-document term frequency in text classification. Inf. Retr. 12 (5) (2009)
Sunghwan Sohn, Won Kim, Donald C. Comeau, W. John Wilbur
Assignment. J. Am. Medical Informatics Assoc. 15 (4) (2008)
Zhiyong Lu, Won Kim, W. John Wilbur
Evaluating Relevance Ranking Strategies for MEDLINE Retrieval. AMIA (2008)
Jimmy Lin, Michael DiCuccio, Vahan Grigoryan, W. John Wilbur
Navigating information spaces: A case study of related article search in PubMed. Inf. Process. Manag. 44 (5) (2008)
Sunghwan Sohn, Donald C. Comeau, Won Kim, W. John Wilbur
Abbreviation definition identification based on automatic precision estimates. BMC Bioinform. 9 (2008)
Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinform. 24 (18) (2008)
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur, Stephen M. Mount
SplicePort - An interactive splice-site analysis tool. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur, Stephen M. Mount
Features generated for computational splice-site prediction correspond to functional elements. BMC Bioinform. 8 (2007)
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction. ICDM Workshops (2007)
W. John Wilbur
Unsupervised Learning of the Morpho-Semantic Relationship in MEDLINE. BioNLP@ACL (2007)
Jimmy Lin, W. John Wilbur
PubMed related articles: a probabilistic topic-based model for content similarity. BMC Bioinform. 8 (2007)
Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. J. Biomed. Informatics 40 (2) (2007)
Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
Combining Resources to Find Answers to Biomedical Questions. TREC (2007)

W. John Wilbur.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

W. John Wilbur