Jingcheng Du

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 66

Top Topics

Electronic Medical Record

Biomedical Literature

Top Venues

J. Am. Medical Informatics Assoc.

BMC Medical Informatics Decis. Mak.

Publications

Surabhi Datta, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang
AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). J. Am. Medical Informatics Assoc. 30 (9) (2023)
Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao
Machine learning-based donor permission extraction from informed consent documents. BMC Bioinform. 24 (1) (2023)
Sicen Liu, Xiaolong Wang, Jingcheng Du, Yongshuai Hou, Xianbing Zhao, Hui Xu, Hui Wang, Yang Xiang, Buzhou Tang
SHAPE: A Sample-Adaptive Hierarchical Prediction Network for Medication Recommendation. IEEE J. Biomed. Health Informatics 27 (12) (2023)
Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR (2023)
Sicen Liu, Xiaolong Wang, Jingcheng Du, Yongshuai Hou, Xianbing Zhao, Hui Xu, Hui Wang, Yang Xiang, Buzhou Tang
SHAPE: A Sample-adaptive Hierarchical Prediction Network for Medication Recommendation. CoRR (2023)
Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. CoRR (2022)
Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Yong Chen, Cui Tao
Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing. CoRR (2022)
Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). CoRR (2022)
Evan Yu, Cui Tao, Jingcheng Du, Degui Zhi, Yang Xiang, Kayo Fujimoto, Xi Luo, John A. Schneider
Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction. AMIA (2022)
Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (5) (2022)
Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI (2022)
Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion
LANN: an Integrated Online Annotation Tool for Information Extraction. ICHI (2022)
Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Larry Bu, Yuji Zhang, Yong Chen, Cui Tao
Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing. BMC Bioinform. (6) (2022)
Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database J. Biol. Databases Curation 2022 (2022) (2022)
Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
LitMC-BERT: transformer-based multi-label classification of biomedical literature with an application on COVID-19 literature curation. CoRR (2022)
Samuel Wang, Jingcheng Du, Lu Tang, Cui Tao
Understanding Public Perceptions of Measles from Twitter Using Multi-Task Convolutional Neural Networks. MedInfo (2021)
Jingcheng Du, Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang, Cui Tao
COVID-19 trial graph: a linked graph for COVID-19 clinical trials. J. Am. Medical Informatics Assoc. 28 (9) (2021)
Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia C. F. Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian
Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets. AMIA (2021)
Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao
Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery. CoRR (2021)
Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
AM2BERT: attention guided and regularized transformer-based multi-label classification model for COVID-19 literature curation. AMIA (2021)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics 115 (2021)
Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang
Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics. Health Informatics J. 26 (2) (2020)
Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu
A study of deep learning approaches for medication and adverse drug event extraction from clinical text. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu
Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA (2020)
Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients. Health Informatics J. 26 (2) (2020)
Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao
Ontological representation-oriented term normalization and standardization of the Research Domain Criteria. Health Informatics J. 26 (2) (2020)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. BMC Medical Informatics Decis. Mak. (1) (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR (2020)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Evaluation of Five Sentence Similarity Models on Electronic Medical Records. BCB (2019)
Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Cui Tao, Yong Chen
Comparing drug safety of hepatitis C therapies using post-market data. BMC Medical Informatics Decis. Mak. (4) (2019)
Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu
Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA (2019)
Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. CoRR (2019)
Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu
ML-Net: multi-label classification of biomedical texts with deep neural networks. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao
Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning. CoRR (2019)
Fang Li, Mingqiang Wang, Huy Anh Pham, Yang Xiang, Muhammad Tuan Amith, Cui Tao, Jingcheng Du, Guozheng Rao
Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology. ICHI (2019)
Jingcheng Du, Rachel Cunningham, Yang Xiang, Fang Li, Yuxi Jia, Julie A. Boom, Sahiti Myneni, Jiang Bian, Chongliang Luo, Yong Chen, Cui Tao
Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media. npj Digit. Medicine 2 (2019)
Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
Text Mining and Machine Learning for Precision Medicine. PSB (2019)
Fang Li, Jingcheng Du, Guozheng Rao, Cui Tao
Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology. AMIA (2018)
Yang Xiang, Jun Xu, Jingcheng Du, Degui Zhi, Cui Tao
Asthma Onset Prediction Using Structured EMR Data. AMIA (2018)
Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu
ML-Net: multi-label classification of biomedical texts with deep neural networks. CoRR (2018)
Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu
Extracting psychiatric stressors for suicide from social media using deep learning. BMC Medical Informatics Decis. Mak. 18 (S-2) (2018)
Xinyuan Zhang, Rui Duan, Jingcheng Du, Jing Huang, Yong Chen, Cui Tao
Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients. ICHI Workshops (2018)
Jingcheng Du, Fang Li, Yuxi Jia, Yang Xiang, Lu Tang, Sahiti Myneni, Cui Tao
Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network. AMIA (2018)
Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao
Term Standardization and Normalization for Research Domain Criteria (RDoC). ICHI Workshops (2018)
Jun Xu, Yaoyun Zhang, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Hua Xu
Detecting Anatomical Entities in Clinical Text. AMIA (2018)
Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang
Exploring Temporal Patterns of Suicidal Behavior on Twitter. ICHI Workshops (2018)
Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen
Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS. AMIA (2018)
Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
Comparing adverse effects of Hepatitis C drugs using FAERS data. BIBM (2018)
Hansi Zhang, Yunpeng Zhao, Christopher Wheldon, Xinsong Du, Terrell Brown, Yi Guo, Stephanie Staras, Jingcheng Du, Cui Tao, Jiang Bian
A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States. AMIA (2017)
Jingcheng Du, Yaoyun Zhang, Cui Tao, Hua Xu
A pilot study of mining association between psychiatric stressors and symptoms in tweets. BIBM (2017)
Jingcheng Du, Jing Huang, Rui Duan, Yong Chen, Cui Tao
Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression. MedInfo (2017)
Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao
Leveraging Machine Learning Based Approaches to Assess Human Papillomavirus Vaccination Sentiment Trends with Twitter. CRI (2017)
Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS. DMBD (2017)
Yi Cai, Jingcheng Du, Jing Huang, Susan S. Ellenberg, Sean Hennessy, Cui Tao, Yong Chen
A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data. BMC Medical Informatics Decis. Mak. 17 (2) (2017)
Jingcheng Du, Jun Xu, Hsing-yi Song, Xiangyu Liu, Cui Tao
Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets. J. Biomed. Semant. 8 (1) (2017)
Jing Huang, Xinyuan Zhang, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data. MedInfo (2017)
Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao
Leveraging machine learning-based approaches to assess human papillomavirus vaccination sentiment trends with Twitter data. BMC Medical Informatics Decis. Mak. 17 (2) (2017)
Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. 7 (2016)
Mohcine Madkour, Hsing-yi Song, Jingcheng Du, Cui Tao
A representational analysis of a temporal indeterminancy display in clinical events. BIBM (2016)
Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. 7 (2016)
Jingcheng Du, Yi Cai, Yong Chen, Cui Tao
Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011. J. Biomed. Semant. 7 (2016)
Cui Tao, Jingcheng Du, Yi Cai, Yong Chen
Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data. MedInfo (2015)
W. Jim Zheng, Jingcheng Du, Jijun Tang, Cui Tao
GSO: A Semantic Web Ontology to Capture 3D Genome Structure. SWAT4LS (2014)