PSB

Publications

2021

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. PSB (2021)
Dokyoon Kim, Ju Han Kim, Jason H. Moore
Translational Bioinformatics: Integrating Electronic Health Record and Omics Data. PSB (2021)
Anish Mudide, Gil Alterovitz
SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions. PSB (2021)
Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker
AI for infectious disease modelling and therapeutics. PSB (2021)
Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez
Advanced Methods for Big Data Analytics in Women's Health. PSB (2021)
Gregory McInnes, Russ B. Altman
Drug Response Pharmacogenetics for 200, 000 UK Biobank Participants. PSB (2021)
Christos A. Makridis, Anish Mudide, Gil Alterovitz
How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data. PSB (2021)
Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, Isaac S. Kohane
Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles. PSB (2021)
Kristin Passero, Shefali Setia Verma, Kimberly McAllister, Arjun Manrai, Chirag J. Patel, Molly A. Hall
What about the environment? Leveraging multi-omic datasets to characterize the environment's role in human health. PSB (2021)
Irene Y. Chen, Emily Alsentzer, Hyesun Park, Richard Thomas, Babina Gosangi, Rahul Gujrathi, Bharti Khurana
Intimate Partner Violence and Injury Prediction From Radiology Reports. PSB (2021)
Anmol Singh, Yizhen Zhong, Layan Nahlawi, Sehwan Park, Tanima De, Cristina Alarcon, Minoli Perera
Incorporation of DNA methylation into eQTL mapping in African Americans. PSB (2021)
Michael B. Mayhew, Elizabeth Tran, Kirindi Choi, Uros Midic, Roland Lüthy, Nandita Damaraju, Ljubomir J. Buturovic
Optimization of Genomic Classifiers for Clinical Deployment: Evaluation of Bayesian Optimization to Select Predictive Models of Acute Infection and In-Hospital Mortality. PSB (2021)
Junjie Chen, Wendy Hui Wang, Xinghua Shi
Differential Privacy Protection Against Membership Inference Attack on Machine Learning for Genomic Data. PSB (2021)
Guanlan Dong, Michael C. Wendl, Bin Zhang, Li Ding, Kuan-Lin Huang
AeQTL: eQTL analysis using region-based aggregation of rare genomic variants. PSB (2021)
Lara Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney
Establishing the reliability of algorithms. PSB (2021)
Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB (2021)
Silvia P. Canelón, Mary Regina Boland
Not All C-sections Are the Same: Investigating Emergency vs. Elective C-section deliveries as an Adverse Pregnancy Outcome. PSB (2021)
Joshua J. Levy, Christian Haudenschild, Clark Barwick, Brock C. Christensen, Louis J. Vaickus
Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks. PSB (2021)
Raquel Aoki, Martin Ester
ParKCa: Causal Inference with Partially Known Causes. PSB (2021)
Samuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference. PSB (2021)
Madeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri
A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker. PSB (2021)
Brett K. Beaulieu-Jones, Christian Darabos, Dokyoon Kim, Anurag Verma, Shilpa Nadimpalli Kobren
Innovative methodological approaches for data integration to derive patterns across diverse, large-scale biomedical datasets. PSB (2021)
Carly A. Bobak, Marek Svoboda, Kristine A. Giffin, Dennis P. Wall, Jason H. Moore
Raising the stakeholders: Improving patient outcomes through interprofessional collaborations in AI for healthcare. PSB (2021)
Katherine J. Sullivan, Marisha Burden, Angela Keniston, Juan M. Banda, Lawrence E. Hunter
Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media Data. PSB (2021)
Kailas Vodrahalli, Roxana Daneshjou, Roberto A. Novoa, Albert Chiou, Justin M. Ko, James Zou
TrueImage: A Machine Learning Algorithm to Improve the Quality of Telehealth Photos. PSB (2021)
Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam
Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience. PSB (2021)
Dov Greenbaum
Making Compassionate Use More Useful: Using real-world data, real-world evidence and digital twins to supplement or supplant randomized controlled trials. PSB (2021)
Peter Washington, Émilie Leblanc, Kaitlyn Dunlap, Yordan Penev, Maya Varma, Jae-Yoon Jung, Brianna Sierra Chrisman, Min Woo Sun, Nate Tyler Stockham, Kelley Marie Paskov, Haik Kalantarian, Catalin Voss, Nick Haber, Dennis P. Wall
Selection of trustworthy crowd workers for telemedical diagnosis of pediatric autism spectrum disorder. PSB (2021)
Morris A. Aguilar, John A. S. McGuigan, Molly A. Hall
Semi-automated NMR Pipeline for Environmental Exposures: New Insights on the Metabolomics of Smokers versus Non-smokers. PSB (2021)
Laleh Seyyed-Kalantari, Guanxiong Liu, Matthew B. A. McDermott, Irene Y. Chen, Marzyeh Ghassemi
CheXclusion: Fairness gaps in deep chest X-ray classifiers. PSB (2021)
Ahmet Mert Hacialiefendioglu, Serhan Yilmaz, Mehmet Koyutürk, Gunnur Karakurt
Co-occurrence Patterns of Intimate Partner Violence. PSB (2021)
Bhavish Dinakar, Mayla Boguslav, Carsten Görg, Deendayal Dinakarpandian
Semantic Changepoint Detection for Finding Potentially Novel Research Publications. PSB (2021)
Olga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski
Computational Challenges and Artificial Intelligence in Precision Medicine. PSB (2021)
Arda Durmaz, Tim A. D. Henderson, Gürkan Bebek
Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers. PSB (2021)
Mary Goldman, Nils Gehlenborg
Making Tools that People Will Use: User-Centered Design in Computational Biology Research. PSB (2021)
Peter Washington, Serena Yeung, Bethany Percha, Nicholas P. Tatonetti, Jan T. Liphardt, Dennis P. Wall
Achieving Trustworthy Biomedical Data Solutions. PSB (2021)

2020