Teresa M. Przytycka

ORCID

Publication Activity (10 Years)

Years Active: 1989-2023
Publications (10 Years): 28

Top Venues

Publications

Bayarbaatar Amgalan, Chi-Ping Day, Teresa M. Przytycka
Exploring tumor-normal cross-talk with TranNet: Role of the environment in tumor progression. PLoS Comput. Biol. 19 (9) (2023)
Soumitra Pal, Brian Oliver, Teresa M. Przytycka
Genus. J. Comput. Biol. 30 (1) (2023)
Teresa M. Przytycka
Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk). WABI (2023)
Christophe Dessimoz, Teresa M. Przytycka
ISMB/ECCB 2021 proceedings. Bioinform. 37 (Supplement) (2021)
Damian Wójtowicz, Mark D. M. Leiserson, Roded Sharan, Teresa M. Przytycka
DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures. PSB (2020)
Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
Session Introduction. PSB (2020)
Jan Hoinka, Yijie Wang, Teresa M. Przytycka
AptaBlocks Online: A Web-Based Toolkit for the In Silico Design of Oligonucleotide Sticky Bridges. J. Comput. Biol. 27 (3) (2020)
Soumitra Pal, Teresa M. Przytycka
Bioinformatics pipeline using JUDI: Just Do It! Bioinform. 36 (8) (2020)
Jan Hoinka, Teresa M. Przytycka
Embedding gene sets in low-dimensional space. Nat. Mach. Intell. 2 (7) (2020)
Yijie Wang, Justin M. Fear, Isabelle Berger, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka
Reconstruction of Gene Regulatory Networks by Integrating Biological Model and a Recommendation System. RECOMB (2020)
Yijie Wang, Jan Hoinka, Teresa M. Przytycka
Accurate Sub-population Detection and Mapping Across Single Cell Experiments with PopCorn. RECOMB (2019)
Itay Sason, Damian Wójtowicz, Welles Robinson, Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer. RECOMB (2019)
Xiaoqing Huang, Damian Wójtowicz, Teresa M. Przytycka
Detecting presence of mutational signatures in cancer with confidence. Bioinform. 34 (2) (2018)
Yijie Wang, Jan Hoinka, Piotr Swiderski, Teresa M. Przytycka
AptaBlocks: Accelerating the Design of RNA-Based Drug Delivery Systems. RECOMB (2018)
Phuong Dao, Yoo-Ah Kim, Damian Wójtowicz, Sanna Madan, Roded Sharan, Teresa M. Przytycka
BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions. PLoS Comput. Biol. 13 (10) (2017)
Yoo-Ah Kim, Sanna Madan, Teresa M. Przytycka
WeSME: uncovering mutual exclusivity of cancer drivers and beyond. Bioinform. 33 (6) (2017)
Yijie Wang, Dong-Yeon Cho, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka
NetREX: Network Rewiring Using EXpression - Towards Context Specific Regulatory Networks. RECOMB (2017)
Phuong Dao, Yoo-Ah Kim, Sanna Madan, Roded Sharan, Teresa M. Przytycka
BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract). RECOMB (2017)
Yoo-Ah Kim, Sanna Madan, Teresa M. Przytycka
WeSME: Uncovering Mutual Exclusivity of Cancer Drivers and Beyond. CoRR (2016)
Pierre Baldi, Teresa M. Przytycka
ISMB 2016 Proceedings. Bioinform. 32 (12) (2016)
Phuong Dao, Damian Wójtowicz, Steevenson Nelson, David Levens, Teresa M. Przytycka
Ups and Downs of Poised RNA Polymerase II in B-Cells. PLoS Comput. Biol. 12 (4) (2016)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. RECOMB (2016)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. CoRR (2016)
Yoo-Ah Kim, Dong-Yeon Cho, Teresa M. Przytycka
Understanding Genotype-Phenotype Effects in Cancer via Network Approaches. PLoS Comput. Biol. 12 (3) (2016)
Fan Zhang, Haoting Chen, Li Na Zhao, Hui Liu, Teresa M. Przytycka, Jie Zheng
Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways. BMC Syst. Biol. 10 (S-1) (2016)
Yoo-Ah Kim, Sanna Madan, Teresa M. Przytycka
WeSME: Uncovering Mutual Exclusivity of Cancer Mutations. BCB (2016)
Teresa M. Przytycka
Preface. J. Comput. Biol. 23 (5) (2016)
Yoo-Ah Kim, Dong-Yeon Cho, Phuong Dao, Teresa M. Przytycka
MEMCover: integrated analysis of mutual exclusivity and functional network reveals dysregulated pathways across multiple cancer types. Bioinform. 31 (12) (2015)
Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka
AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application. RECOMB (2014)
Peng Yang, Min Wu, Jing Guo, Chee Keong Kwoh, Teresa M. Przytycka, Jie Zheng
LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms. BMC Bioinform. 15 (2014)
Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka
Module Cover - A New Approach to Genotype-Phenotype Studies. Pacific Symposium on Biocomputing (2013)
Eric Batchelor, Maricel G. Kann, Teresa M. Przytycka, Benjamin J. Raphael, Damian Wójtowicz
Modeling cell heterogeneity: from single-cell variations to mixed cells populations. Pacific Symposium on Biocomputing (2013)
Dong-Yeon Cho, Teresa M. Przytycka
Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model. RECOMB (2013)
Min Wu, Chee Keong Kwoh, Teresa M. Przytycka, Jing Li, Jie Zheng
Integration of genomic and epigenomic features to predict meiotic recombination hotspots in human and mouse. BCB (2012)
Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka
Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression. PLoS Comput. Biol. 8 (8) (2012)
Dong-Yeon Cho, Yoo-Ah Kim, Teresa M. Przytycka
Chapter 5: Network Biology Approach to Complex Diseases. PLoS Comput. Biol. 8 (12) (2012)
Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka
Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. RECOMB (2012)
Jan Hoinka, Elena Zotenko, Adam Friedman, Zuben E. Sauna, Teresa M. Przytycka
Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers. Bioinform. 28 (12) (2012)
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
Identifying Causal Genes and Dysregulated Pathways in Complex Diseases. PLoS Comput. Biol. 7 (3) (2011)
Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (4) (2011)
Min Wu, Chee Keong Kwoh, Teresa M. Przytycka, Jing Li, Jie Zheng
Prediction of Trans-regulators of Recombination Hotspots in Mouse Genome. BIBM (2011)
Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim
Session Introduction. Pacific Symposium on Biocomputing (2010)
Teresa M. Przytycka, Mona Singh, Donna K. Slonim
Toward the dynamic interactome: it's about time. Briefings Bioinform. 11 (1) (2010)
Jie Zheng, David Zhang, Pawel F. Przytycki, Rafal Zielinski, Jacek Capala, Teresa M. Przytycka
SimBoolNet - a Cytoscape plugin for dynamic simulation of signaling networks. Bioinform. 26 (1) (2010)
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. RECOMB (2010)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 11 (2010)
Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh
Session Introduction. Pacific Symposium on Biocomputing (2009)
Rafal Zielinski, Pawel F. Przytycki, Jie Zheng, David Zhang, Teresa M. Przytycka, Jacek Capala
The crosstalk between EGF, IGF, and Insulin cell signaling pathways - computational and experimental analysis. BMC Syst. Biol. 3 (2009)
Yang Huang, Stefan Wuchty, Michael T. Ferdig, Teresa M. Przytycka
. Bioinform. 25 (12) (2009)
Balaji Raghavachari, Asba Tasneem, Teresa M. Przytycka, Raja Jothi
DOMINE: a database of protein domain interactions. Nucleic Acids Res. 36 (Database-Issue) (2008)
Katia S. Guimarães, Teresa M. Przytycka
Interrogating domain-domain interactions with parsimony based approaches. BMC Bioinform. 9 (2008)
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
Improving Strand Pairing Prediction through Exploring Folding Cooperativity. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (4) (2008)
Elena Zotenko, Julián Mestre, Dianne P. O'Leary, Teresa M. Przytycka
Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality. PLoS Comput. Biol. 4 (8) (2008)
Teresa M. Przytycka
Stability of Characters and Construction of Phylogenetic Trees. J. Comput. Biol. 14 (5) (2007)
Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka
Clade of Animals. RECOMB-CG (2007)
Raja Jothi, Teresa M. Przytycka, L. Aravind
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. BMC Bioinform. 8 (2007)
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
Bringing Folding Pathways into Strand Pairing Prediction. WABI (2007)
Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand
Graph Theoretical Insights into Evolution of Multidomain Proteins. J. Comput. Biol. 13 (2) (2006)
Teresa M. Przytycka
Chordal Graphs in Computational Biology - New Insights and Applications. International Conference on Computational Science (2) (2006)
Raja Jothi, Elena Zotenko, Asba Tasneem, Teresa M. Przytycka
COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations. Bioinform. 22 (7) (2006)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 7 (2006)
Teresa M. Przytycka
An Important Connection Between Network Motifs and Parsimony Models. RECOMB (2006)
Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka
Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations. Algorithms Mol. Biol. 1 (2006)
Raja Jothi, Maricel G. Kann, Teresa M. Przytycka
Predicting protein-protein interaction by searching evolutionary tree automorphism space. ISMB (Supplement of Bioinformatics) (2005)
Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand
Graph Theoretical Insights into Evolution of Multidomain Proteins. RECOMB (2005)
Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka
Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. Systems Biology and Regulatory Genomics (2005)
Teresa M. Przytycka, Yi-Kuo Yu
Scale-free networks versus evolutionary drift. Comput. Biol. Chem. 28 (4) (2004)
Richard Cole, Martin Farach-Colton, Ramesh Hariharan, Teresa M. Przytycka, Mikkel Thorup
) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees. SIAM J. Comput. 30 (5) (2000)
S. Rao Kosaraju, Teresa M. Przytycka, Ryan S. Borgstrom
On an Optimal Split Tree Problem. WADS (1999)
Lisa Higham, Teresa M. Przytycka
Asymptotically Optimal Election on Weighted Rings. SIAM J. Comput. 28 (2) (1998)
Lawrence L. Larmore, Teresa M. Przytycka
The Optimal Alphabetic Tree Problem Revisited. J. Algorithms 28 (1) (1998)
Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting
General Techniques for Comparing Unrooted Evolutionary Trees. STOC (1997)
Jørgen Bang-Jensen, Mohamed El Haddad, Yannis Manoussakis, Teresa M. Przytycka
Parallel Algorithms for the Hamiltonian Cycle and Hamiltonian Path Problems in Semicomplete Bipartite Digraphs. Algorithmica 17 (1) (1997)
Teresa M. Przytycka, Józef H. Przytycki
A simple construction of high representativity triangulations. Discret. Math. 173 (1-3) (1997)
Mike Paterson, Teresa M. Przytycka
On the Complexity of String Folding. Discret. Appl. Math. 71 (1-3) (1996)
Artur Czumaj, Krzysztof Diks, Teresa M. Przytycka
Parallel Maximum Independent Set in Convex Bipartite Graphs. Inf. Process. Lett. 59 (6) (1996)
Mike Paterson, Teresa M. Przytycka
On the Complexity of String Folding. ICALP (1996)
David G. Kirkpatrick, Teresa M. Przytycka
Parallel Construction of Binary Trees with Near Optimal Weighted Path Lengt. Algorithmica 15 (2) (1996)
Lisa Higham, Teresa M. Przytycka
A Simple, Efficient Algorithm for Maximum Finding on Rings. Inf. Process. Lett. 58 (6) (1996)
Lawrence L. Larmore, Teresa M. Przytycka
A Parallel Algorithm for Optimum Height-Limited Alphabetic Binary Trees. J. Parallel Distributed Comput. 35 (1) (1996)
Teresa M. Przytycka
Sparse dynamic programming for maximum agreement subtree problem. Mathematical Hierarchies and Biology (1996)
Teresa M. Przytycka, Lisa Higham
Optimal Cost-Sensitive Distributed Minimum Spanning Tree Algorithm. SWAT (1996)
Lawrence L. Larmore, Teresa M. Przytycka
Constructing Huffman Trees in Parallel. SIAM J. Comput. 24 (6) (1995)
Jan Kratochvíl, Teresa M. Przytycka
Grid Intersection and Box Intersection Graphs on Surfaces (Extended Abstract). Graph Drawing (1995)
Martin Farach, Teresa M. Przytycka, Mikkel Thorup
Computing the Agreement of Trees with Bounded Degrees. ESA (1995)
Martin Farach, Teresa M. Przytycka, Mikkel Thorup
On the Agreement of Many Trees. Inf. Process. Lett. 55 (6) (1995)
Teresa M. Przytycka, Lawrence L. Larmore
The Optimal Alphabetic Tree Problem Revisited. ICALP (1994)
Lisa Higham, Teresa M. Przytycka
Asymptotically Optimal Election on Weighted Rings. SWAT (1994)
Christos Levcopoulos, Teresa M. Przytycka
A Work-Time Trade-off in Parallel Computation of Huffman Trees and Concave Least Weight Subsequence Problem. Parallel Process. Lett. 4 (1994)
Lawrence L. Larmore, Teresa M. Przytycka
A Fast Algorithm for Optimum Height-Limited Alphabetic Binary Trees. SIAM J. Comput. 23 (6) (1994)
Lawrence L. Larmore, Teresa M. Przytycka, Wojciech Rytter
Parallel Construction of Optimal Alphabetic Trees. SPAA (1993)
Lisa Higham, Teresa M. Przytycka
A Simple, Efficient Algorithm for Maximum Finding on Rings. WDAG (1993)
S. Bellantoni, Irith Ben-Arroyo Hartman, Teresa M. Przytycka, Sue Whitesides
Grid intersection graphs and boxicity. Discret. Math. 114 (1-3) (1993)
Pilar de la Torre, Raymond Greenlaw, Teresa M. Przytycka
Optimal Tree Ranking is in NC. Parallel Process. Lett. 2 (1992)
Lawrence L. Larmore, Teresa M. Przytycka
Parallel Construction of Trees with Optimal Weighted Path Length. SPAA (1991)
Teresa M. Przytycka, Józef H. Przytycki
Subexponentially computable truncations of Jones-types polynomials. Graph Structure Theory (1991)
Teresa M. Przytycka, Józef H. Przytycki
Surface triangulations without short noncontractible cycles. Graph Structure Theory (1991)
Teresa M. Przytycka, Derek G. Corneil
Parallel Algorithms for Parity Graphs. J. Algorithms 12 (1) (1991)
David G. Kirkpatrick, Teresa M. Przytycka
An optimal parallel minimax tree algorithm. SPDP (1990)
David G. Kirkpatrick, Teresa M. Przytycka
Parallel Construction of near Optimal binary Trees. SPAA (1990)

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Publication Activity (10 Years)

Top Topics

Top Venues

Teresa M. Przytycka