WABI

Keyphrases

Publications

2024

Luís Cunha, Ignasi Sau, Uéverton S. Souza
On the Complexity of the Median and Closest Permutation Problems. WABI (2024)
Mahmudur Rahman Hera, David Koslicki
Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation. WABI (2024)
Adam Cicherski, Anna Lisiecka, Norbert Dojer
AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction. WABI (2024)
Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier
b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index. WABI (2024)
Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead
MEM-Based Pangenome Indexing for k-mer Queries. WABI (2024)
Jens Zentgraf, Sven Rahmann
Swiftly Identifying Strongly Unique k-Mers. WABI (2024)
Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. WABI (2024)
Bertrand Marchand, Nadia Tahiri, Olivier Tremblay Savard, Manuel Lafond
Finding Maximum Common Contractions Between Phylogenetic Networks. WABI (2024)
Lukas Hübner, Alexandros Stamatakis
Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests. WABI (2024)
Yao-ban Chan
An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree. WABI (2024)
Ragnar Groot Koerkamp
A*PA2: Up to 19× Faster Exact Global Alignment. WABI (2024)
Tomás Vinar
Bioinformatics of Pathogens (Invited Talk). WABI (2024)
Yuanyuan Qi, Mohammed El-Kebir
Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees. WABI (2024)
Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao
Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads. WABI (2024)
Sebastian S. Schmidt, Santeri Toivonen, Paul Medvedev, Alexandru I. Tomescu
Applying the Safe-And-Complete Framework to Practical Genome Assembly. WABI (2024)
Giovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi
McDag: Indexing Maximal Common Subsequences in Practice. WABI (2024)
Ragnar Groot Koerkamp, Giulio Ermanno Pibiri
The {mod-minimizer}: A Simple and Efficient Sampling Algorithm for Long k-Mers. WABI (2024)
Kimon Boehmer, Sarah J. Berkemer, Sebastian Will, Yann Ponty
RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions. WABI (2024)
Leonard Bohnenkämper, Jens Stoye, Daniel Dörr
Reconstructing Rearrangement Phylogenies of Natural Genomes. WABI (2024)
Théo Boury, Laurent Bulteau, Yann Ponty
RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs. WABI (2024)
Tsuyoshi Urata, Manato Yokoyama, Momoko Hayamizu
Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation. WABI (2024)
Md. Hasin Abrar, Paul Medvedev
PLA-index: A k-mer Index Exploiting Rank Curve Linearity. WABI (2024)
Front Matter, Table of Contents, Preface, Conference Organization. WABI (2024)
Rocco Ascone, Giulia Bernardini, Alessio Conte, Massimo Equi, Estéban Gabory, Roberto Grossi, Nadia Pisanti
A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs. WABI (2024)

volume 312, 2024

24th International Workshop on Algorithms in Bioinformatics, WABI 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom WABI 312 (2024)

2023

volume 273, 2023

23rd International Workshop on Algorithms in Bioinformatics, WABI 2023, September 4-6, 2023, Houston, TX, USA WABI 273 (2023)