Pawel Górecki

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 33

Top Topics

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

Publications

Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
Asymmetric Cluster-Based Measures for Comparative Phylogenetics. J. Comput. Biol. 31 (4) (2024)
Jerzy Tiuryn, Natalia Rutecka, Pawel Górecki
Phylogenetic network-assisted rooting of unrooted gene trees. J. Comb. Optim. 47 (5) (2024)
Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek
Unifying duplication episode clustering and gene-species mapping inference. Algorithms Mol. Biol. 19 (1) (2024)
Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek
Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. WABI (2023)
Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
The Asymmetric Cluster Affinity Cost. RECOMB-CG (2023)
Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Górecki
Embedding gene trees into phylogenetic networks by conflict resolution algorithms. Algorithms Mol. Biol. 17 (1) (2022)
Jerzy Tiuryn, Natalia Rutecka, Pawel Górecki
Rooting Gene Trees via Phylogenetic Networks. COCOON (2022)
Alvin Chon, Pawel Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics. IPDPS Workshops (2022)
Pawel Tabaszewski, Pawel Górecki, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein
Consensus of All Solutions for Intractable Phylogenetic Tree Inference. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Górecki
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks. WABI (2021)
Jaroslaw Paszek, Oliver Eulenstein, Pawel Górecki
Novel genomic duplication models through integer linear programming. BCB (2021)
Pawel Górecki, Oliver Eulenstein, Jerzy Tiuryn
The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Jaroslaw Paszek, Alexey Markin, Pawel Górecki, Oliver Eulenstein
Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming. J. Comput. Biol. 28 (8) (2021)
Javad Ansarifar, Alexey Markin, Pawel Górecki, Oliver Eulenstein
Integer Linear Programming Formulation for the Unified Duplication-Loss-Coalescence Model. ISBRA (2020)
Jaroslaw Paszek, Jerzy Tiuryn, Pawel Górecki
Minimizing genomic duplication episodes. Comput. Biol. Chem. 89 (2020)
Pawel Górecki, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein
Mathematical properties of the gene duplication cost. Discret. Appl. Math. 258 (2019)
Agnieszka Mykowiecka, Pawel Górecki
Credibility of Evolutionary Events in Gene Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Pawel Górecki, Alexey Markin, Oliver Eulenstein
Feasibility Algorithms for the Duplication-Loss Cost. COCOON (2019)
Dawid Dabkowski, Pawel Tabaszewski, Pawel Górecki
Minimizing the deep coalescence cost. J. Bioinform. Comput. Biol. 16 (5) (2018)
Pawel Tabaszewski, Pawel Górecki, Oliver Eulenstein
Phylogenetic Consensus for Exact Median Trees. BCB (2018)
Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki
Locus-aware decomposition of gene trees with respect to polytomous species trees. Algorithms Mol. Biol. 13 (1) (2018)
Agnieszka Mykowiecka, Anna Muszewska, Pawel Górecki
Inferring time-consistent and well-supported horizontal gene transfers. BIBM (2018)
Pawel Górecki, Alexey Markin, Oliver Eulenstein
Cophenetic Distances: A Near-Linear Time Algorithmic Framework. COCOON (2018)
Agnieszka Mykowiecka, Pawel Szczesny, Pawel Górecki
Inferring Gene-Species Assignments in the Presence of Horizontal Gene Transfer. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Pawel Górecki, Oliver Eulenstein
Bijective Diameters of Gene Tree Parsimony Costs. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Jaroslaw Paszek, Pawel Górecki
Efficient Algorithms for Genomic Duplication Models. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
Unconstrained Diameters for Deep Coalescence. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Pawel Górecki, Alexey Markin, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein
Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees. ISBRA (2017)
Jaroslaw Paszek, Pawel Górecki
New Algorithms for the Genomic Duplication Problem. RECOMB-CG (2017)
Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki
Detecting Locus Acquisition Events in Gene Trees. WABI (2017)
Jaroslaw Paszek, Pawel Górecki
Genomic duplication problems for unrooted gene trees. BMC Genom. 17 (S-1) (2016)
Pawel Górecki, Jaroslaw Paszek, Agnieszka Mykowiecka
Mean Values of Gene Duplication and Loss Cost Functions. ISBRA (2016)
Agnieszka Mykowiecka, Pawel Górecki
Bootstrapping Algorithms for Gene Duplication and Speciation Events. AlCoB (2016)
Pawel Górecki, Oliver Eulenstein
Gene Tree Diameter for Deep Coalescence. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (1) (2015)
Arkadiusz Betkier, Pawel Szczesny, Pawel Górecki
Fast Algorithms for Inferring Gene-Species Associations. ISBRA (2015)
Pawel Górecki, Oliver Eulenstein
Refining discordant gene trees. BMC Bioinform. 15 (S-13) (2014)
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
Duplication Cost Diameters. ISBRA (2014)
Pawel Górecki, Oliver Eulenstein
Maximizing Deep Coalescence Cost. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Pawel Górecki, Oliver Eulenstein
DrML: Probabilistic Modeling of Gene Duplications. J. Comput. Biol. 21 (1) (2014)
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
Unconstrained gene tree diameters for deep coalescence. BCB (2014)
Pawel Górecki, Oliver Eulenstein, Jerzy Tiuryn
Unrooted Tree Reconciliation: A Unified Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Wen-Chieh Chang, Pawel Górecki, Oliver Eulenstein
Exact solutions for species Tree Inference from discordant gene Trees. J. Bioinform. Comput. Biol. 11 (5) (2013)
Pawel Górecki, Oliver Eulenstein
Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem. BMC Bioinform. 13 (S-10) (2012)
Pawel Górecki, Jerzy Tiuryn
Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model. Logic and Program Semantics (2012)
Pawel Górecki, Oliver Eulenstein
A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees. ISBRA (2012)
Pawel Górecki, Oliver Eulenstein
Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms. COCOON (2012)
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches. ISBRA (2012)
Pawel Górecki, Oliver Eulenstein
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees. ISBRA (2011)
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses. BMC Bioinform. 12 (S-1) (2011)
Pawel Górecki
H-trees: a Model of Evolutionary Scenarios with Horizontal Gene Transfer. Fundam. Informaticae 103 (1-4) (2010)
Pawel Górecki, Jerzy Tiuryn
URec: a system for unrooted reconciliation. Bioinform. 23 (4) (2007)
Pawel Górecki, Jerzy Tiuryn
Inferring phylogeny from whole genomes. Bioinform. 23 (2) (2007)
Pawel Górecki, Jerzy Tiuryn
DLS-trees: A model of evolutionary scenarios. Theor. Comput. Sci. 359 (1-3) (2006)
Pawel Górecki
Reconciliation problems for duplication, loss and horizontal gene transfer. RECOMB (2004)
Pawel Górecki, Jerzy Tiuryn
On the Structure of Reconciliations. Comparative Genomics (2004)