Xiaoqiu Huang

Publication Activity (10 Years)

Years Active: 1988-2022
Publications (10 Years): 2

Top Topics

Physicochemical Properties

Highly Scalable

Amino Acid Residues

Top Venues

IPDPS Workshops

Publications

Alvin Chon, Pawel Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics. IPDPS Workshops (2022)
Philip L. Tzou, Xiaoqiu Huang, Robert W. Shafer
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences. BMC Bioinform. 18 (1) (2017)
Ankit Agrawal, Xiaoqiu Huang
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (1) (2011)
Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang
Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices. BIOCOMP (2010)
Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang
Derived distribution points heuristic for fast pairwise statistical significance estimation. BCB (2010)
Ankit Agrawal, Xiaoqiu Huang
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Bioinform. 25 (8) (2009)
Ankit Agrawal, Xiaoqiu Huang
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. BMC Bioinform. 10 (S-3) (2009)
Xiaoqiu Huang, Martin Vingron
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. J. Comput. Biol. 16 (7) (2009)
Ankit Agrawal, Xiaoqiu Huang
Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment. BIBM (2008)
Ankit Agrawal, Xiaoqiu Huang
Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets. ICIT (2008)
Xiaoqiu Huang
Sequence Alignment with an Appropriate Substitution Matrix. J. Comput. Biol. 15 (2) (2008)
Ankit Agrawal, Xiaoqiu Huang
Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance. ICIT (2008)
Ankit Agrawal, Volker Brendel, Xiaoqiu Huang
Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Ankit Agrawal, Xiaoqiu Huang
DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio. EIT (2008)
Ankit Agrawal, Xiaoqiu Huang
Pairwise statistical significance of local sequence alignment using multiple parameter sets. DTMBIO (2008)
Ankit Agrawal, Arka P. Ghosh, Xiaoqiu Huang
Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition. ISBRA (2008)
Ankit Agrawal, Volker Brendel, Xiaoqiu Huang
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. ISBRA (2008)
Jianmin Wang, Xiaoqiu Huang
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage. BMC Bioinform. 6 (2005)
Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao
Efficient combination of multiple word models for improved sequence comparison. Bioinform. 20 (16) (2004)
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds. BIBE (2004)
Xiaoqiu Huang, Liang Ye, I-Hsuan Yang, Kun-Mao Chao
A Sensitive Sequence Comparison Method. SNPD (2004)
Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
Parallel Syntenic Alignments. Parallel Process. Lett. 13 (4) (2003)
Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinform. 19 (5) (2003)
Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao
MAVG: locating non-overlapping maximum average segments in a given sequence. Bioinform. 19 (1) (2003)
Xiaoqiu Huang, Kun-Mao Chao
A generalized global alignment algorithm. Bioinform. 19 (2) (2003)
Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
Parallel Syntenic Alignments. HiPC (2002)
Xiaoqiu Huang
Performance of the CAP2 sequence assembly program. Mathematical Support for Molecular Biology (1998)
Xiaoqiu Huang
A Context Dependent Method for Comparing Sequences. CPM (1994)
Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller
Parametric Recomuting in Alignment Graphs. CPM (1994)
Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison
Parallelization of a local similarity algorithm. Comput. Appl. Biosci. 8 (2) (1992)
Xiaoqiu Huang, Ross C. Hardison, Webb Miller
A space-efficient algorithm for local similarities. Comput. Appl. Biosci. 6 (4) (1990)
Xiaoqiu Huang
Computing Local Sequence Similarities on a Hypercube. ICPP (3) (1990)
Xiaoqiu Huang
A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor. Int. J. Parallel Program. 18 (3) (1989)
Xiaoqiu Huang
A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function. Inf. Process. Lett. 27 (6) (1988)