Geo Pertea

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 2

Top Topics

Detection Algorithm

Experimental Results On Real World

Hybrid Approaches

Top Venues

PLoS Comput. Biol.

Publications

Alaina Shumate, Brandon Wong, Geo Pertea, Mihaela Pertea
Improved transcriptome assembly using a hybrid of long and short reads with StringTie. PLoS Comput. Biol. 18 (6) (2022)
Ales Varabyou, Geo Pertea, Christopher Pockrandt, Mihaela Pertea
TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets. Bioinform. 37 (20) (2021)
Mihaela Pertea, Geo Pertea, Steven L. Salzberg
Detection of Lineage-Specific Evolutionary Changes among Primate Species. BMC Bioinform. 12 (2011)
Agnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, Pablo D. Rabinowicz
The TIGR Maize Database. Nucleic Acids Res. 34 (Database-Issue) (2006)
Yuandan Lee, Jennifer Tsai, S. Sunkara, Svetlana Karamycheva, Geo Pertea, Razvan Sultana, Valentin Antonescu, Agnes P. Chan, Foo Cheung, John Quackenbush
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Xiequn Xu, William Bradley Barbazuk, Yucheng Feng, Karel Schubert, Agnes P. Chan, Geo Pertea, Li Zheng, Foo Cheung, Yuandan Lee
Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize Genome. CSB (2004)
Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinform. 19 (5) (2003)
John Quackenbush, Jennifer Cho, Daniel Lee, Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, Joseph White
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res. 29 (1) (2001)
John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, Jonathan Upton
The TIGR Gene Indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res. 28 (1) (2000)