The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
Yuandan LeeJennifer TsaiS. SunkaraSvetlana KaramychevaGeo PerteaRazvan SultanaValentin AntonescuAgnes P. ChanFoo CheungJohn QuackenbushPublished in: Nucleic Acids Res. (2005)
Keyphrases
- genomic sequences
- dna sequences
- gene clusters
- sequenced genomes
- gene expression
- biological processes
- escherichia coli
- microarray gene
- gene expression analysis
- comparative genomics
- coding regions
- gene expression profiles
- microarray
- gene expression data
- microarray data analysis
- protein coding regions
- gene ontology
- genomic data
- genome rearrangements
- transcription factor binding sites
- binding sites
- human genome
- evolutionary history
- biological data
- candidate genes
- high throughput
- microarray data
- homo sapiens
- k means
- gene regulatory networks
- horizontal gene transfer
- sequence data
- gene selection
- regulatory elements
- essential genes
- gene ontology terms
- genome sequences
- splice site
- clustering algorithm
- gene expression patterns
- transcription factors
- genome scale
- gene sets
- protein protein interactions
- protein function
- disease genes
- differentially expressed genes
- microarray datasets
- sequence analysis
- regulatory networks
- gene regulation
- microarray gene expression data
- alternative splicing
- gene expression datasets
- gene prediction
- biologically meaningful
- high dimensionality
- metabolic pathways
- systems biology
- molecular biology
- cluster analysis
- biological networks
- gene networks
- single nucleotide polymorphisms
- genome annotation
- motif discovery
- rna seq
- protein interaction