Ross C. Hardison

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 6

Top Topics

Integrating Multiple

Images Depicting

Systems Biology

Top Venues

Nucleic Acids Res.

Publications

Guanjue Xiang, Belinda Giardine, Lin An, Chen Sun, Cheryl A. Keller, Elisabeth F. Heuston, Stacie M. Anderson, Martha Kirby, David M. Bodine, Yu Zhang, Ross C. Hardison
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation. BMC Bioinform. 24 (1) (2023)
Belinda Giardine, Philippe Joly, Serge Pissard, Henri Wajcman, David H. K. Chui, Ross C. Hardison, George P. Patrinos
Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations. Nucleic Acids Res. 49 (Database-Issue) (2021)
Guanjue Xiang, Belinda Giardine, Shaun Mahony, Yu Zhang, Ross C. Hardison
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types. Bioinform. 37 (18) (2021)
Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A. Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, Barbara J. Wold
The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nat. 583 (7818) (2020)
Jens Lichtenberg, Guanjue Xiang, Elisabeth F. Heuston, Belinda Giardine, Cheryl A. Keller, Ross C. Hardison, David M. Bodine, Yu Zhang
Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation. BIBE (2019)
Jens Lichtenberg, Elisabeth F. Heuston, Tejaswini Mishra, Cheryl A. Keller, Ross C. Hardison, David M. Bodine
SBR-Blood: systems biology repository for hematopoietic cells. Nucleic Acids Res. 44 (Database-Issue) (2016)
Yeonok Lee, Debashis Ghosh, Ross C. Hardison, Yu Zhang
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS. Bioinform. 30 (12) (2014)
Belinda Giardine, Joseph Borg, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas, Henri Wajcman, Ross C. Hardison, George P. Patrinos
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations. Nucleic Acids Res. 42 (Database-Issue) (2014)
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515 (7527) (2014)
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Eric D. Green, Webb Miller
An Effective Method for Detecting Gene Conversion Events in Whole Genomes. J. Comput. Biol. 17 (9) (2010)
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller
Whole-Genome Analysis of Gene Conversion Events. RECOMB-CG (2009)
Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller
Aligning Two Genomic Sequences That Contain Duplications. RECOMB-CG (2009)
Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36 (Database-Issue) (2008)
Laura Elnitski, Belinda Giardine, Prachi Shah, Yi Zhang, Cathy Riemer, Matthew Weirauch, Richard Burhans, Webb Miller, Ross C. Hardison
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Res. 33 (Database-Issue) (2005)
George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, David H. K. Chui, Nicholas P. Anagnou, Henri Wajcman, Ross C. Hardison
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. Nucleic Acids Res. 32 (Database-Issue) (2004)
Scott Schwartz, Laura Elnitski, Mei Li, Matthew Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison, Webb Miller
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. Nucleic Acids Res. 31 (13) (2003)
Nikola Stojanovic, Piotr Berman, Deborah Gumucio, Ross C. Hardison, Webb Miller
A Linear-Time Algorithm for the 1-Mismatch Problem. WADS (1997)
Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison
A database for globin gene expression data. HICSS (5) (1995)
Zheng Zhang, Balaji Raghavachari, Ross C. Hardison, Webb Miller
Chaining Multiple-Alignment Blocks. J. Comput. Biol. 1 (3) (1994)
Kun-Mao Chao, Ross C. Hardison, Webb Miller
Recent Developments in Linear-Space Alignment Methods: A Survey. J. Comput. Biol. 1 (4) (1994)
Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang, Ross C. Hardison
Constructing Aligned Sequence Blocks. J. Comput. Biol. 1 (1) (1994)
Kun-Mao Chao, Ross C. Hardison, Webb Miller
Locating well-conserved regions within a pairwise alignment. Comput. Appl. Biosci. 9 (4) (1993)
Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison
Parallelization of a local similarity algorithm. Comput. Appl. Biosci. 8 (2) (1992)
Xiaoqiu Huang, Ross C. Hardison, Webb Miller
A space-efficient algorithm for local similarities. Comput. Appl. Biosci. 6 (4) (1990)