Michael P. Snyder

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 18

Top Topics

Ensemble Learning

Anatomical Landmarks

Top Venues

Publications

Han Li, Jianyang Zeng, Michael P. Snyder, Sai Zhang
PRS-Net: Interpretable Polygenic Risk Scores via Geometric Learning. RECOMB (2024)
Ivana Maric, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker, Maria Xenochristou, Camilo Espinosa, Davide De Francesco, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling, Karl G. Sylvester, Gary L. Darmstadt, Virginia D. Winn, Gary M. Shaw, David A. Relman, Stephen R. Quake, Martin S. Angst, Michael P. Snyder, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour
Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns 3 (12) (2022)
Md. Mobashir Hasan Shandhi, Peter J. Cho, Ali R. Roghanizad, Karnika Singh, Will Wang, Oana M. Enache, Amanda Stern, Rami Sbahi, Bilge Tatar, Sean Fiscus, Qi Xuan Khoo, Yvonne Kuo, Xiao Lu, Joseph Hsieh, Alena Kalodzitsa, Amir Bahmani, Arash Alavi, Utsab Ray, Michael P. Snyder, Geoffrey S. Ginsburg, Dana K. Pasquale, Christopher W. Woods, Ryan J. Shaw, Jessilyn Dunn
A method for intelligent allocation of diagnostic testing by leveraging data from commercial wearable devices: a case study on COVID-19. npj Digit. Medicine 5 (2022)
Xiaotao Shen, Wei Shao, Chuchu Wang, Liang Liang, Songjie Chen, Sai Zhang, Mirabela Rusu, Michael P. Snyder
Deep learning-based pseudo-mass spectrometry imaging analysis for precision medicine. Briefings Bioinform. 23 (5) (2022)
Xiaotao Shen, Si Wu, Liang Liang, Songjie Chen, Kévin Contrepois, Zheng-Jiang Zhu, Michael P. Snyder
metID: an R package for automatable compound annotation for LC-MS-based data. Bioinform. 38 (2) (2022)
Xiaotao Shen, Chuchu Wang, Michael P. Snyder
massDatabase: utilities for the operation of the public compound and pathway database. Bioinform. 38 (19) (2022)
Meng Wang, Lihua Jiang, Michael P. Snyder
AdaTiSS: a novel data-Adaptive robust method for identifying Tissue Specificity Scores. Bioinform. 37 (23) (2021)
Hayan Lee, Gilbert Feng, Ed Esplin, Michael P. Snyder
Predictive Signatures for Lung Adenocarcinoma Prognostic Trajectory by Multiomics Data Integration and Ensemble Learning. ISMCO (2021)
Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, Michael P. Snyder, Cuiping Pan
Swarm: A federated cloud framework for large-scale variant analysis. PLoS Comput. Biol. 17 (5) (2021)
Hootan Rashtian, Solmaz Shariat Torbaghan, Salar Rahili, Michael P. Snyder, Nima Aghaeepour
Heart Rate and CGM Feature Representation Diabetes Detection From Heart Rate: Learning Joint Features of Heart Rate and Continuous Glucose Monitors Yields Better Representations. IEEE Access 9 (2021)
Amir Bahmani, Ziye Xing, Vandhana Krishnan, Utsab Ray, Frank Mueller, Amir Alavi, Philip S. Tsao, Michael P. Snyder, Cuiping Pan
Hummingbird: efficient performance prediction for executing genomic applications in the cloud. Bioinform. 37 (17) (2021)
Adam Michaleas, Lars Gjesteby, Michael P. Snyder, David Chavez, Meagan Ash, Matthew A. Melton, Damon G. Lamb, Sara N. Burke, Kevin J. Otto, Lee Kamentsky, Webster Guan, Kwanghun Chung, Laura J. Brattain
Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment. HPEC (2020)
Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark deCaestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma A. Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nat. 574 (7777) (2019)
Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai, Dyani Gaudilliere, Edward Ganio, Xiaoyuan Han, Kazuo Ando, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray, Virginia D. Winn, Maurice L. Druzin, Ronald Gibbs, Gary L. Darmstadt, David B. Lewis, Vahid Partovi Nia, Bruno Agard, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder, David A. Relman, Stephen R. Quake, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinform. 35 (1) (2019)
Victoria Popic, Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou
Fast Metagenomic Binning via Hashing and Bayesian Clustering. J. Comput. Biol. 25 (7) (2018)
Victoria Popic, Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou
GATTACA: Lightweight Metagenomic Binning Using Kmer Counting. RECOMB (2017)
Qi Zhang, Xin Zeng, Samuel G. Younkin, Trupti Kawli, Michael P. Snyder, Sündüz Keles
Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection. BMC Bioinform. 17 (2016)
Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou
Genome assembly from synthetic long read clouds. Bioinform. 32 (12) (2016)
Douglas H. Phanstiel, Alan P. Boyle, Nastaran Heidari, Michael P. Snyder
Mango: a bias-correcting ChIA-PET analysis pipeline. Bioinform. 31 (19) (2015)
Douglas H. Phanstiel, Alan P. Boyle, Carlos L. Araya, Michael P. Snyder
Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures. Bioinform. 30 (19) (2014)
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515 (7527) (2014)
Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven M. Johnson, Michael P. Snyder, Serafim Batzoglou, Arend Sidow
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements. Tiny Trans. Comput. Sci. 2 (2013)
Jiantao Wu, Krzysztof R. Grzeda, Chip Stewart, Fabian Grubert, Alexander E. Urban, Michael P. Snyder, Gabor T. Marth
Copy Number Variation detection from 1000 Genomes project exon capture sequencing data. BMC Bioinform. 13 (2012)