Arend Sidow

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 3

Top Topics

Discovery Process

Cancer Diagnosis

Inference Process

Top Venues

J. Comput. Biol.

Tiny Trans. Comput. Sci.

Publications

Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti
De novo mutational signature discovery in tumor genomes using SparseSignatures. PLoS Comput. Biol. 17 (6) (2021)
Alex Bishara, Yuling Liu, Dorna Kashef Haghighi, Ziming Weng, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
Read Clouds Uncover Variation in Complex Regions of the Human Genome. RECOMB (2015)
Noah Spies, Justin M. Zook, Marc Salit, Arend Sidow
svviz: a read viewer for validating structural variants. Bioinform. 31 (24) (2015)
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. RECOMB (2013)
Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven M. Johnson, Michael P. Snyder, Serafim Batzoglou, Arend Sidow
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements. Tiny Trans. Comput. Sci. 2 (2013)
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. J. Comput. Biol. 20 (11) (2013)
Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou
Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++. PLoS Comput. Biol. 6 (12) (2010)
Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno
SHRiMP: Accurate Mapping of Short Color-space Reads. PLoS Comput. Biol. 5 (5) (2009)
Eric A. Stone, Arend Sidow
Constructing a meaningful evolutionary average at the phylogenetic center of mass. BMC Bioinform. 8 (2007)
Gregory M. Cooper, Senthil A. G. Singaravelu, Arend Sidow
ABC: software for interactive browsing of genomic multiple sequence alignment data. BMC Bioinform. 5 (2004)
Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou
Chaining Algorithms for Alignment of Draft Sequence. WABI (2004)