John A. Stamatoyannopoulos

Publication Activity (10 Years)

Years Active: 2005-2019
Publications (10 Years): 1

Top Topics

Statistical Analysis

Multiple Domains

Top Venues

PLoS Comput. Biol.

Publications

Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. Bioinform. 35 (22) (2019)
Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
Integrative analysis of 111 reference human epigenomes Open. Nat. 518 (7539) (2015)
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515 (7527) (2014)
Nisha Rajagopal, Wei Xie, Yan Li, Uli Wagner, Wei Wang, John A. Stamatoyannopoulos, Jason Ernst, Manolis Kellis, Bing Ren
RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State. PLoS Comput. Biol. 9 (3) (2013)
Shane J. Neph, Scott Kuehn, Alex P. Reynolds, Eric Haugen, Robert E. Thurman, Audra K. Johnson, Eric Rynes, Matthew T. Maurano, Jeff Vierstra, Sean Thomas, Richard S. Sandstrom, Richard Humbert, John A. Stamatoyannopoulos
BEDOPS: high-performance genomic feature operations. Bioinform. 28 (14) (2012)
Robert E. Thurman, William Stafford Noble, John A. Stamatoyannopoulos
Multi-Scale Correlations in Continuous Genomic Data. Pacific Symposium on Biocomputing (2008)
Heng Lian, William A. Thompson, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble, Charles E. Lawrence
Automated mapping of large-scale chromatin structure in ENCODE. Bioinform. 24 (17) (2008)
Shobhit Gupta, Jonathan H. Dennis, Robert E. Thurman, Robert E. Kingston, John A. Stamatoyannopoulos, William Stafford Noble
Predicting Human Nucleosome Occupancy from Primary Sequence. PLoS Comput. Biol. 4 (8) (2008)
Saurabh Asthana, Mikhail A. Roytberg, John A. Stamatoyannopoulos, Shamil R. Sunyaev
Analysis of Sequence Conservation at Nucleotide Resolution. PLoS Comput. Biol. 3 (12) (2007)
Nathan Day, Andrew Hemmaplardh, Robert E. Thurman, John A. Stamatoyannopoulos, William Stafford Noble
Unsupervised segmentation of continuous genomic data. Bioinform. 23 (11) (2007)
Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble
Automated Validation of Polymerase Chain Reaction Amplicon Melting Curves. J. Bioinform. Comput. Biol. 4 (2) (2006)
Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble
Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves. CSB (2005)
William Stafford Noble, Scott Kuehn, Robert E. Thurman, Man Yu, John A. Stamatoyannopoulos
signature of human gene regulatory sequence. ISMB (Supplement of Bioinformatics) (2005)