David Haussler

ORCID

Publication Activity (10 Years)

Years Active: 1980-2023
Publications (10 Years): 27

Top Venues

Publications

Luis R. Nassar, Galt P. Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clayton M. Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Brian T. Lee, Christopher M. Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J. Raney, Daniel Schmelter, Matthew L. Speir, Brittney D. Wick, Ann S. Zweig, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent
The UCSC Genome Browser database: 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Brian T. Lee, Galt P. Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clayton M. Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Christopher M. Lee, Pranav Muthuraman, Luis R. Nassar, Beagan Nguy, Tiana Pereira, Gerardo Perez, Brian J. Raney, Kate R. Rosenbloom, Daniel Schmelter, Matthew L. Speir, Brittney D. Wick, Ann S. Zweig, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent
The UCSC Genome Browser database: 2022 update. Nucleic Acids Res. 50 (D1) (2022)
David F. Parks, Kateryna Voitiuk, Jinghui Geng, Matthew A. T. Elliott, Matthew G. Keefe, Erik A. Jung, Ash Robbins, Pierre V. Baudin, Victoria T. Ly, Nico Hawthorne, Dylan Yong, Sebastian E. Sanso, Nick Rezaee, Jess L. Sevetson, Spencer T. Seiler, Robert Currie, Alex A. Pollen, Keith B. Hengen, Tomasz J. Nowakowski, Mohammed Andres Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu, David Haussler
IoT cloud laboratory: Internet of Things architecture for cellular biology. Internet Things 20 (2022)
Pierre V. Baudin, Victoria T. Ly, Pattawong Pansodtee, Erik A. Jung, Robert Currie, Ryan Hoffman, Helen Rankin Willsey, Alex A. Pollen, Tomasz J. Nowakowski, David Haussler, Mohammed Andres Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu
Low cost cloud based remote microscopy for biological sciences. Internet Things 18 (2022)
Maxim Kuznetsov, Aviv Elor, Sri Kurniawan, Colleen M. Bosworth, Yohei Rosen, Nicholas Heyer, Mircea Teodorescu, Benedict Paten, David Haussler
The Immersive Graph Genome Explorer: Navigating Genomics in Immersive Virtual Reality. SEGAH (2021)
Pierre V. Baudin, Victoria T. Ly, Pattawong Pansodtee, Erik A. Jung, Robert Currie, Ryan Hoffman, Helen Rankin Willsey, Alex A. Pollen, Tomasz J. Nowakowski, David Haussler, Mohammed Andres Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu
Low cost cloud based remote microscopy for biological sciences. CoRR (2021)
Jairo Navarro Gonzalez, Ann S. Zweig, Matthew L. Speir, Daniel Schmelter, Kate R. Rosenbloom, Brian J. Raney, Conner C. Powell, Luis R. Nassar, Nathan D. Maulding, Christopher M. Lee, Brian T. Lee, Angie S. Hinrichs, Alastair C. Fyfe, Jason D. Fernandes, Mark Diekhans, Hiram Clawson, Jonathan Casper, Anna Benet-Pagès, Galt P. Barber, David Haussler, Robert M. Kuhn, Maximilian Haeussler, W. James Kent
The UCSC Genome Browser database: 2021 update. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jacob Pfeil, Lauren M. Sanders, Ioannis N. Anastopoulos, A. Geoffrey Lyle, Alana S. Weinstein, Yuanqing Xue, Andrew Blair, Holly C. Beale, Alex Lee, Stanley G. Leung, Phuong T. Dinh, Avanthi Tayi Shah, Marcus R. Breese, W. Patrick Devine, Isabel Bjork, Sofie R. Salama, E. Alejandro Sweet-Cordero, David Haussler, Olena Morozova Vaske
Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures. PLoS Comput. Biol. 16 (4) (2020)
Alex Spaeth, Maryam Tebyani, David Haussler, Mircea Teodorescu
Spiking neural state machine for gait frequency entrainment in a flexible modular robot. CoRR (2020)
Alex Spaeth, Maryam Tebyani, David Haussler, Mircea Teodorescu
Neuromorphic Closed-Loop Control of a Flexible Modular Robot by a Simulated Spiking Central Pattern Generator. RoboSoft (2020)
Christopher M. Lee, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Jairo Navarro Gonzalez, Angie S. Hinrichs, Brian T. Lee, Luis R. Nassar, Conner C. Powell, Brian J. Raney, Kate R. Rosenbloom, Daniel Schmelter, Matthew L. Speir, Ann S. Zweig, David Haussler, Maximilian Haeussler, Robert M. Kuhn, W. James Kent
UCSC Genome Browser enters 20th year. Nucleic Acids Res. 48 (Database-Issue) (2020)
Maximilian Haeussler, Ann S. Zweig, Cath Tyner, Matthew L. Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M. Lee, Brian T. Lee, Angie S. Hinrichs, Jairo Navarro Gonzalez, David Gibson, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P. Barber, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2019 update. Nucleic Acids Res. 47 (Database-Issue) (2019)
David Haussler, Maciej Smuga-Otto, Jordan M. Eizenga, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
A Flow Procedure for Linearization of Genome Sequence Graphs. J. Comput. Biol. 25 (7) (2018)
Jonathan Casper, Ann S. Zweig, Chris Villarreal, Cath Tyner, Matthew L. Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M. Lee, Brian T. Lee, Donna Karolchik, Angie S. Hinrichs, Maximilian Haeussler, Luvina Guruvadoo, Jairo Navarro Gonzalez, David Gibson, Ian T. Fiddes, Christopher Eisenhart, Mark Diekhans, Hiram Clawson, Galt P. Barber, Joel Armstrong, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2018 update. Nucleic Acids Res. 46 (Database-Issue) (2018)
Cath Tyner, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Christopher Eisenhart, Clayton M. Fischer, David Gibson, Jairo Navarro Gonzalez, Luvina Guruvadoo, Maximilian Haeussler, Steven G. Heitner, Angie S. Hinrichs, Donna Karolchik, Brian T. Lee, Christopher M. Lee, Parisa Nejad, Brian J. Raney, Kate R. Rosenbloom, Matthew L. Speir, Chris Villarreal, John Vivian, Ann S. Zweig, David Haussler, Michael Kuhn, W. James Kent
The UCSC Genome Browser database: 2017 update. Nucleic Acids Res. 45 (Database-Issue) (2017)
Xiaoqian Jiang, Claudiu Farcas, Benedict Paten, Mark Diekhans, Paul Avillach, Wallace Wadge, David Haussler, Lucila Ohno-Machado, Ida Sim
Count Everything: Secure Count Query Framework Across Big Data Centers. CRI (2017)
David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov
A Flow Procedure for the Linearization of Genome Sequence Graphs. RECOMB (2017)
Daniel R. Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. BMC Bioinform. 17 (2016)
Angie S. Hinrichs, Brian J. Raney, Matthew L. Speir, Brooke L. Rhead, Jonathan Casper, Donna Karolchik, Robert M. Kuhn, Kate R. Rosenbloom, Ann S. Zweig, David Haussler, W. James Kent
UCSC Data Integrator and Variant Annotation Integrator. Bioinform. 32 (9) (2016)
Matthew L. Speir, Ann S. Zweig, Kate R. Rosenbloom, Brian J. Raney, Benedict Paten, Parisa Nejad, Brian T. Lee, Katrina Learned, Donna Karolchik, Angie S. Hinrichs, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Pauline A. Fujita, Christopher Eisenhart, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P. Barber, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 44 (Database-Issue) (2016)
Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
Integrative analysis of 111 reference human epigenomes Open. Nat. 518 (7539) (2015)
Maximilian Haeussler, Brian J. Raney, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Donna Karolchik, Jonathan Casper, Matthew L. Speir, David Haussler, W. James Kent
Navigating protected genomics data with UCSC Genome Browser in a Box. Bioinform. 31 (5) (2015)
Mary Goldman, Brian Craft, Teresa Swatloski, Melissa S. Cline, Olena Morozova, Mark Diekhans, David Haussler, Jingchun Zhu
The UCSC Cancer Genomics Browser: update 2015. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten
Building a Pan-Genome Reference for a Population. J. Comput. Biol. 22 (5) (2015)
Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler
The NIH BD2K center for big data in translational genomics. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Adam M. Novak, Yohei Rosen, David Haussler, Benedict Paten
Canonical, stable, general mapping using context schemes. Bioinform. 31 (22) (2015)
Kate R. Rosenbloom, Joel Armstrong, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann S. Zweig, Donna Karolchik, William James Kent, David Haussler, Benedict Paten
Comparative assembly hubs: Web-accessible browsers for comparative genomics. Bioinform. 30 (23) (2014)
Benedict Paten, Daniel R. Zerbino, Glenn Hickey, David Haussler
A unifying model of genome evolution under parsimony. BMC Bioinform. 15 (2014)
Catherine M. Farrell, Nuala A. O'Leary, Rachel A. Harte, Jane E. Loveland, Laurens G. Wilming, Craig Wallin, Mark Diekhans, Daniel Barrell, Stephen M. J. Searle, Bronwen L. Aken, Susan M. Hiatt, Adam Frankish, Marie-Marthe Suner, Bhanu Rajput, Charles A. Steward, Garth R. Brown, Ruth Bennett, Michael R. Murphy, Wendy Wu, Mike P. Kay, Jennifer Hart, Jeena Rajan, Janet Weber, Catherine Snow, Lillian D. Riddick, Toby Hunt, David Webb, Mark Thomas, Pamela Tamez, Sanjida H. Rangwala, Kelly M. McGarvey, Shashikant Pujar, Andrei Shkeda, Jonathan M. Mudge, Jose M. Gonzalez, James G. R. Gilbert, Stephen J. Trevanion, Robert Baertsch, Jennifer L. Harrow, Tim J. P. Hubbard, James M. Ostell, David Haussler, Kim D. Pruitt
Current status and new features of the Consensus Coding Sequence database. Nucleic Acids Res. 42 (Database-Issue) (2014)
Donna Karolchik, Galt P. Barber, Jonathan Casper, Hiram Clawson, Melissa S. Cline, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Angie S. Hinrichs, Katrina Learned, Brian T. Lee, Chin H. Li, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Cricket A. Sloan, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2014 update. Nucleic Acids Res. 42 (Database-Issue) (2014)
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten
Building a Pangenome Reference for a Population. RECOMB (2014)
Christopher Wilks, Melissa S. Cline, Erich Weiler, Mark Diekhans, Brian Craft, Christy Martin, Daniel Murphy, Howdy Pierce, John Black, Donavan Nelson, Brian Litzinger, Thomas Hatton, Lori Maltbie, Michael Ainsworth, Patrick Allen, Linda Rosewood, Elizabeth Mitchell, Bradley Smith, Jim Warner, John Groboske, Haifang Telc, Daniel Wilson, Brian Sanford, Hannes Schmidt, David Haussler, Daniel Maltbie
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database J. Biol. Databases Curation 2014 (2014)
Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu
The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Evan O. Paull, Daniel E. Carlin, Mario Niepel, Peter K. Sorger, David Haussler, Joshua M. Stuart
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). Bioinform. 29 (21) (2013)
Robert M. Kuhn, David Haussler, W. James Kent
The UCSC genome browser and associated tools. Briefings Bioinform. 14 (2) (2013)
Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler
HAL: a hierarchical format for storing and analyzing multiple genome alignments. Bioinform. 29 (10) (2013)
Kate R. Rosenbloom, Cricket A. Sloan, Venkat S. Malladi, Timothy R. Dreszer, Katrina Learned, Vanessa Kirkup, Matthew C. Wong, Morgan Maddren, Ruihua Fang, Steven G. Heitner, Brian T. Lee, Galt P. Barber, Rachel A. Harte, Mark Diekhans, Jeffrey C. Long, Steven P. Wilder, Ann S. Zweig, Donna Karolchik, Robert M. Kuhn, David Haussler, W. James Kent
ENCODE Data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 41 (Database-Issue) (2013)
Christopher K. Wong, Charles J. Vaske, Sam Ng, J. Zachary Sanborn, Stephen C. Benz, David Haussler, Joshua M. Stuart
The UCSC Interaction Browser: multidimensional data views in pathway context. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Sam Ng, Eric A. Collisson, Artem Sokolov, Theodore Goldstein, Abel Gonzalez-Perez, Núria López-Bigas, Christopher Benz, David Haussler, Joshua M. Stuart
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis. Bioinform. 28 (18) (2012)
Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res. 40 (Database-Issue) (2012)
Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent
ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res. 40 (Database-Issue) (2012)
Brian J. Raney, Melissa S. Cline, Kate R. Rosenbloom, Timothy R. Dreszer, Katrina Learned, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Krishna M. Roskin, Bernard B. Suh, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Vanessa Kirkup, Pauline A. Fujita, Brooke L. Rhead, Kayla E. Smith, Andy Pohl, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent
ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Res. 39 (Database-Issue) (2011)
Krishna M. Roskin, Benedict Paten, David Haussler
Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization. BMC Bioinform. 12 (2011)
Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard B. Suh, David Haussler
Cactus Graphs for Genome Comparisons. J. Comput. Biol. 18 (3) (2011)
David Haussler
Cancer genomics. KDD (2011)
J. Zachary Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Laurence R. Meyer, Charles J. Vaske, Mary Goldman, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, W. James Kent, Joshua M. Stuart, David Haussler, Jingchun Zhu
The UCSC cancer genomics browser: update 2011. Nucleic Acids Res. 39 (Database-Issue) (2011)
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, Antonio Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent
The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 39 (Database-Issue) (2011)
Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard B. Suh, David Haussler
Cactus Graphs for Genome Comparisons. RECOMB (2010)
Charles J. Vaske, Stephen C. Benz, J. Zachary Sanborn, Dent Earl, Christopher Szeto, Jingchun Zhu, David Haussler, Joshua M. Stuart
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinform. 26 (12) (2010)
Kate R. Rosenbloom, Timothy R. Dreszer, Michael Pheasant, Galt P. Barber, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Ting Wang, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Katrina Learned, Brooke L. Rhead, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent
ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res. 38 (Database-Issue) (2010)
Brooke L. Rhead, Donna Karolchik, Robert M. Kuhn, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Mark Diekhans, Kayla E. Smith, Kate R. Rosenbloom, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Katrina Learned, Fan Hsu, Jennifer Hillman-Jackson, Rachel A. Harte, Belinda Giardine, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser database: update 2010. Nucleic Acids Res. 38 (Database-Issue) (2010)
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Ting Wang, Kayla E. Smith, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser Database: update 2009. Nucleic Acids Res. 37 (Database-Issue) (2009)
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Louxin Zhang, Webb Miller, David Haussler
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications. J. Comput. Biol. 15 (8) (2008)
Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler
gene finding. Bioinform. 24 (5) (2008)
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Webb Miller, David Haussler
The infinite sites model of genome evolution. Proc. Natl. Acad. Sci. USA 105 (38) (2008)
Donna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober, Webb Miller, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent
The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res. 36 (Database-Issue) (2008)
David Haussler
Computing how we became human. STOC (2008)
Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications. RECOMB-CG (2007)
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent
The UCSC genome browser database: update 2007. Nucleic Acids Res. 35 (Database-Issue) (2007)
Chen-Hsiang Yeang, David Haussler
Detecting Coevolution in and among Protein Domains. PLoS Comput. Biol. 3 (11) (2007)
Daryl J. Thomas, Kate R. Rosenbloom, Hiram Clawson, Angie S. Hinrichs, Heather Trumbower, Brian J. Raney, Donna Karolchik, Galt P. Barber, Rachel A. Harte, Jennifer Hillman-Jackson, Robert M. Kuhn, Brooke L. Rhead, Kayla E. Smith, Archana Thakkapallayil, Ann S. Zweig, David Haussler, W. James Kent
The ENCODE Project at UC Santa Cruz. Nucleic Acids Res. 35 (Database-Issue) (2007)
Daryl J. Thomas, Heather Trumbower, Andrew D. Kern, Brooke L. Rhead, Robert M. Kuhn, David Haussler, W. James Kent
Variation resources at UC Santa Cruz. Nucleic Acids Res. 35 (Database-Issue) (2007)
Jingchun Zhu, J. Zachary Sanborn, Mark Diekhans, Craig B. Lowe, Tom H. Pringle, David Haussler
Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage. PLoS Comput. Biol. 3 (12) (2007)
Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 34 (Database-Issue) (2006)
Jing Wu, David Haussler
Coding Exon Detection Using Comparative Sequences. J. Comput. Biol. 13 (6) (2006)
Charles W. Sugnet, Karpagam Srinivasan, Tyson Clark, Georgeann O'Brien, Melissa S. Cline, Hui Wang, Alan Williams, David Kulp, John Blume, David Haussler, Manuel Ares
Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. PLoS Comput. Biol. 2 (1) (2006)
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
Detecting the Dependent Evolution of Biosequences. RECOMB (2006)
Adam C. Siepel, Katherine S. Pollard, David Haussler
New Methods for Detecting Lineage-Specific Selection. RECOMB (2006)
Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome. PLoS Comput. Biol. 2 (4) (2006)
David Haussler
Ultraconserved Elements, Living Fossil Transposons, and Rapid Bursts of Change: Reconstructing the Uneven Evolutionary History of the Human Genome. RECOMB (2006)
Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler
The UCSC Known Genes. Bioinform. 22 (9) (2006)
Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinform. 21 (12) (2005)
Fan Hsu, Tom H. Pringle, Robert M. Kuhn, Donna Karolchik, Mark Diekhans, David Haussler, W. James Kent
The UCSC Proteome Browser. Nucleic Acids Res. 33 (Database-Issue) (2005)
Gill Bejerano, David Haussler, Mathieu Blanchette
Into the heart of darkness: large-scale clustering of human non-coding DNA. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent
The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 32 (Database-Issue) (2004)
Adam C. Siepel, David Haussler
Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis. J. Comput. Biol. 11 (2/3) (2004)
Adam C. Siepel, David Haussler
Computational identification of evolutionarily conserved exons. RECOMB (2004)
Vladimir Jojic, Nebojsa Jojic, Christopher Meek, Dan Geiger, Adam C. Siepel, David Haussler, David Heckerman
Efficient approximations for learning phylogenetic HMM models from data. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Charles W. Sugnet, W. James Kent, Manuel Ares, David Haussler
Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice. Pacific Symposium on Biocomputing (2004)
Krishna M. Roskin, Mark Diekhans, David Haussler
Score Functions for Determining Regional Conservation in Two-Species Local Alignments. J. Comput. Biol. 11 (2/3) (2004)
Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Yontao Lu, Krishna M. Roskin, Matt Schwartz, Charles W. Sugnet, Daryl J. Thomas, Ryan J. Weber, David Haussler, W. James Kent
The UCSC Genome Browser Database. Nucleic Acids Res. 31 (1) (2003)
David Haussler
Computational analysis of the human and other mammalian genomes. RECOMB (2003)
Hui Wang, Earl Hubbell, Jing-Shan Hu, Gangwu Mei, Melissa S. Cline, Gang Lu, Tyson Clark, Michael A. Siani-Rose, Manuel Ares, David Kulp, David Haussler
Gene structure-based splice variant deconvolution using a microarry platform. ISMB (Supplement of Bioinformatics) (2003)
Krishna M. Roskin, Mark Diekhans, David Haussler
Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. RECOMB (2003)
Adam C. Siepel, David Haussler
Combining phylogenetic and hidden Markov models in biosequence analysis. RECOMB (2003)
Rachel Karchin, Kevin Karplus, David Haussler
Classifying G-protein coupled receptors with support vector machines. Bioinform. 18 (1) (2002)
Paul Pavlidis, Terrence S. Furey, M. Liberto, David Haussler, William Noble Grundy
Promoter Region-Based Classification of Genes. Pacific Symposium on Biocomputing (2001)
Terrence S. Furey, Nello Cristianini, Nigel Duffy, David W. Bednarski, Michèl Schummer, David Haussler
Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinform. 16 (10) (2000)
Tommi S. Jaakkola, Mark Diekhans, David Haussler
A Discriminative Framework for Detecting Remote Protein Homologies. J. Comput. Biol. 7 (1-2) (2000)
Tommi S. Jaakkola, David Haussler
Probabilistic kernel regression models. AISTATS (1999)
Betty Lazareva-Ulitsky, David Haussler
A Probabilistic Approach to a Consensus Multiple Alignment. Pacific Symposium on Biocomputing (1999)
Tommi S. Jaakkola, Mark Diekhans, David Haussler
Using the Fisher Kernel Method to Detect Remote Protein Homologies. ISMB (1999)
Nicolò Cesa-Bianchi, David Haussler
A Graph-theoretic Generalization of the Sauer-Shelah Lemma. Discret. Appl. Math. 86 (1) (1998)
Tommi S. Jaakkola, David Haussler
Exploiting Generative Models in Discriminative Classifiers. NIPS (1998)
David Haussler, Jyrki Kivinen, Manfred K. Warmuth
Sequential Prediction of Individual Sequences Under General Loss Functions. IEEE Trans. Inf. Theory 44 (5) (1998)
David Haussler, Manfred Opper
Metric Entropy and Minimax Risk in Classification. Structures in Logic and Computer Science (1997)
Nicolò Cesa-Bianchi, Yoav Freund, David Haussler, David P. Helmbold, Robert E. Schapire, Manfred K. Warmuth
How to use expert advice. J. ACM 44 (3) (1997)
Martin G. Reese, Frank H. Eeckman, David Kulp, David Haussler
Improved Splice Site Detection in Genie. J. Comput. Biol. 4 (3) (1997)

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David Haussler