Peter K. Sorger

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 20

Top Topics

Top Venues

IEEE Trans. Vis. Comput. Graph.

Nucleic Acids Res.

Publications

Lukas Herzberger, Markus Hadwiger, Robert Krüger, Peter K. Sorger, Hanspeter Pfister, Eduard Gröller, Johanna Beyer
Residency Octree: A Hybrid Approach for Scalable Web-Based Multi-Volume Rendering. IEEE Trans. Vis. Comput. Graph. 30 (1) (2024)
Boshen Yan, Guihong Wan, Haim Schweitzer, Zoltan Maliga, Sara Khattab, Kun-Hsing Yu, Peter K. Sorger, Yevgeniy R. Semenov
Pass-Efficient Algorithms for Graph Spectral Clustering (Student Abstract). AAAI (2024)
Simon Warchol, Jakob Troidl, Jeremy Muhlich, Robert Krüger, John Hoffer, Tica Lin, Johanna Beyer, Elena L. Glassman, Peter K. Sorger, Hanspeter Pfister
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring. Comput. Graph. Forum 43 (3) (2024)
Maulik K. Nariya, Caitlin E. Mills, Peter K. Sorger, Artem Sokolov
Paired evaluation of machine-learning models characterizes effects of confounders and outliers. Patterns 4 (8) (2023)
Lukas Herzberger, Markus Hadwiger, Robert Krüger, Peter K. Sorger, Hanspeter Pfister, Eduard Gröller, Johanna Beyer
Residency Octree: A Hybrid Approach for Scalable Web-Based Multi-Volume Rendering. CoRR (2023)
Maulik K. Nariya, Caitlin E. Mills, Peter K. Sorger, Artem Sokolov
Correction: Paired evaluation of machine-learning models characterizes effects of confounders and outliers. Patterns 4 (8) (2023)
Simon Warchol, Robert Krüger, Ajit Johnson Nirmal, Giorgio Gaglia, Jared Jessup, Cecily C. Ritch, John Hoffer, Jeremy Muhlich, Megan L. Burger, Tyler Jacks, Sandro Santagata, Peter K. Sorger, Hanspeter Pfister
Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data. IEEE Trans. Vis. Comput. Graph. 29 (1) (2023)
Changchang Liu, Peter Kutchukian, Nhan D. Nguyen, Mohammed Alquraishi, Peter K. Sorger
A Hybrid Structure-Based Machine Learning Approach for Predicting Kinase Inhibition by Small Molecules. J. Chem. Inf. Model. 63 (17) (2023)
Jeremy Muhlich, Yu-An Chen, Clarence Han-Wei Yapp, Douglas Russell, Sandro Santagata, Peter K. Sorger
Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR. Bioinform. 38 (19) (2022)
Fabian Fröhlich, Peter K. Sorger
Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models. PLoS Comput. Biol. 18 (7) (2022)
Jared Jessup, Robert Krüger, Simon Warchol, John Hoffer, Jeremy Muhlich, Cecily C. Ritch, Giorgio Gaglia, Shannon Coy, Yu-An Chen, Jia-Ren Lin, Sandro Santagata, Peter K. Sorger, Hanspeter Pfister
Scope2Screen: Focus+Context Techniques for Pathology Tumor Assessment in Multivariate Image Data. IEEE Trans. Vis. Comput. Graph. 28 (1) (2022)
Matthew E. Berginski, Nienke Moret, Changchang Liu, Dennis Goldfarb, Peter K. Sorger, Shawn M. Gomez
The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jared Jessup, Robert Krüger, Simon Warchol, John Hoffer, Jeremy Muhlich, Cecily C. Ritch, Giorgio Gaglia, Shannon Coy, Yu-An Chen, Jia-Ren Lin, Sandro Santagata, Peter K. Sorger, Hanspeter Pfister
Scope2Screen: Focus+Context Techniques for Pathology Tumor Assessment in Multivariate Image Data. CoRR (2021)
Marc-Joseph Antonini, Deborah Plana, Shriya Srinivasan, Lyla Atta, Aditya Achanta, Helen L. Yang, Avilash K. Cramer, Jacob Freake, Michael S. Sinha, Sherry H. Yu, Nicole R. LeBoeuf, Ben Linville-Engler, Peter K. Sorger
A Crisis-Responsive Framework for Medical Device Development Applied to the COVID-19 Pandemic. Frontiers Digit. Health 3 (2021)
Robert Krüger, Johanna Beyer, Won-Dong Jang, Nam Wook Kim, Artem Sokolov, Peter K. Sorger, Hanspeter Pfister
Facetto: Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data. IEEE Trans. Vis. Comput. Graph. 26 (1) (2020)
John Hoffer, Rumana Rashid, Jeremy Muhlich, Yu-An Chen, Douglas Russell, Juha Ruokonen, Robert Krüger, Hanspeter Pfister, Sandro Santagata, Peter K. Sorger
Minerva: a light-weight, narrative image browser for multiplexed tissue images. J. Open Source Softw. 5 (54) (2020)
Salma Abdel Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter K. Sorger, Hanspeter Pfister
Channel Embedding for Informative Protein Identification from Highly Multiplexed Images. MICCAI (5) (2020)
Shu Wang, Jia-Ren Lin, Eduardo D. Sontag, Peter K. Sorger
Inferring reaction network structure from single-cell, multiplex data, using toric systems theory. PLoS Comput. Biol. 15 (12) (2019)
Petar V. Todorov, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger
INDRA-IPM: interactive pathway modeling using natural language with automated assembly. Bioinform. 35 (21) (2019)
John A. Bachman, Benjamin M. Gyori, Peter K. Sorger
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining. BMC Bioinform. 19 (1) (2018)
Qiaonan Duan, Corey Flynn, Mario Niepel, Marc Hafner, Jeremy Muhlich, Nicolas F. Fernandez, Andrew D. Rouillard, Christopher M. Tan, Edward Y. Chen, Todd R. Golub, Peter K. Sorger, Aravind Subramanian, Avi Ma'ayan
LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Evan O. Paull, Daniel E. Carlin, Mario Niepel, Peter K. Sorger, David Haussler, Joshua M. Stuart
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). Bioinform. 29 (21) (2013)
Daniel C. Kirouac, Julio Saez-Rodriguez, Jennifer Swantek, John M. Burke, Douglas A. Lauffenburger, Peter K. Sorger
Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks. BMC Syst. Biol. 6 (2012)
Suzanne Gaudet, Sabrina L. Spencer, William W. Chen, Peter K. Sorger
Exploring the Contextual Sensitivity of Factors that Determine Cell-to-Cell Variability in Receptor-Mediated Apoptosis. PLoS Comput. Biol. 8 (4) (2012)
Melody K. Morris, Julio Saez-Rodriguez, David C. Clarke, Peter K. Sorger, Douglas A. Lauffenburger
Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli. PLoS Comput. Biol. 7 (3) (2011)
Kyoung Ae Kim, Sabrina L. Spencer, John G. Albeck, John M. Burke, Peter K. Sorger, Suzanne Gaudet, Do Hyun Kim
Systematic calibration of a cell signaling network model. BMC Bioinform. 11 (2010)
Regina Samaga, Julio Saez-Rodriguez, Leonidas G. Alexopoulos, Peter K. Sorger, Steffen Klamt
The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data. PLoS Comput. Biol. 5 (8) (2009)
Bree B. Aldridge, Julio Saez-Rodriguez, Jeremy Muhlich, Peter K. Sorger, Douglas A. Lauffenburger
Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling. PLoS Comput. Biol. 5 (4) (2009)
Julio Saez-Rodriguez, Arthur Goldsipe, Jeremy Muhlich, Leonidas G. Alexopoulos, Bjorn Millard, Douglas A. Lauffenburger, Peter K. Sorger
. Bioinform. 24 (6) (2008)
Leonidas G. Alexopoulos, Douglas A. Lauffenburger, Peter K. Sorger
Modeling pro-death signaling pathways in cancer hepatocytes using multi-combinatorial treatments of inhibitors and stimuli. BIBE (2008)
Khuloud Jaqaman, Jonas F. Dorn, Eugenio Marco, Peter K. Sorger, Gaudenz Danuser
Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics. Bioinform. 23 (13) (2007)
Birgit Schoeberl, Emily Pace, Shavonne Howard, Viara Garantcharova, Art Kudla, Peter K. Sorger, Ulrik B. Nielsen
A Data-Driven Computational Model of the ErbB Receptor Signaling Network. EMBC (2006)
Kevin A. Janes, Jason R. Kelly, Suzanne Gaudet, John G. Albeck, Peter K. Sorger, Douglas A. Lauffenburger
Cue-Signal-Response Analysis of TNF-Induced Apoptosis by Partial Least Squares Regression of Dynamic Multivariate Data. J. Comput. Biol. 11 (4) (2004)