John A. Bachman

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 7

Top Topics

Medical Literature

Top Venues

Database J. Biol. Databases Curation

Publications

Helena Balabin, Charles Tapley Hoyt, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández
ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs. SWAT4HCLS (2022)
Helena Balabin, Charles Tapley Hoyt, Colin Birkenbihl, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Paul G. Plöger, Martin Hofmann-Apitius, Daniel Domingo-Fernández
STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs. Bioinform. 38 (6) (2022)
Albert Steppi, Benjamin M. Gyori, John A. Bachman
Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature. J. Open Source Softw. 5 (45) (2020)
Charles Tapley Hoyt, Daniel Domingo-Fernández, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John A. Bachman, Benjamin M. Gyori, Patrick Greene, Martin Hofmann-Apitius
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. Database J. Biol. Databases Curation 2019 (2019)
Rebecca Sharp, Adarsh Pyarelal, Benjamin M. Gyori, Keith Alcock, Egoitz Laparra, Marco Antonio Valenzuela-Escárcega, Ajay Nagesh, Vikas Yadav, John A. Bachman, Zheng Tang, Heather C. Lent, Fan Luo, Mithun Paul, Steven Bethard, Kobus Barnard, Clayton T. Morrison, Mihai Surdeanu
Eidos, INDRA, & Delphi: From Free Text to Executable Causal Models. NAACL-HLT (Demonstrations) (2019)
Petar V. Todorov, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger
INDRA-IPM: interactive pathway modeling using natural language with automated assembly. Bioinform. 35 (21) (2019)
John A. Bachman, Benjamin M. Gyori, Peter K. Sorger
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining. BMC Bioinform. 19 (1) (2018)