Gill Bejerano

Publication Activity (10 Years)

Years Active: 1999-2022
Publications (10 Years): 7

Top Topics

High Throughput

Transcription Factors

Top Venues

PLoS Comput. Biol.

USENIX Annual Technical Conference

Nat. Comput. Sci.

Publications

Yosuke Tanigawa, Ethan Dyer, Gill Bejerano
WhichTF is functionally important in your open chromatin data? PLoS Comput. Biol. 18 (8) (2022)
Jacob A. Blindenbach, Karthik Anand Jagadeesh, Gill Bejerano, David J. Wu
Avoiding genetic racial profiling in criminal DNA profile databases. Nat. Comput. Sci. 1 (4) (2021)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Coprocessor. IEEE Micro 39 (3) (2019)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. USENIX Annual Technical Conference (2019)
Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup. HPCA (2019)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. ASPLOS (2018)
Harendra Guturu, Sandeep Chinchali, Shoa L. Clarke, Gill Bejerano
Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories. PLoS Comput. Biol. 12 (2) (2016)
Geetu Tuteja, Karen Betancourt Moreira, Tisha Chung, Jenny Chen, Aaron M. Wenger, Gill Bejerano
Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data. PLoS Comput. Biol. 10 (1) (2014)
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent
The UCSC genome browser database: update 2007. Nucleic Acids Res. 35 (Database-Issue) (2007)
Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 34 (Database-Issue) (2006)
Gill Bejerano
-values. Bioinform. 22 (17) (2006)
Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome. PLoS Comput. Biol. 2 (4) (2006)
Gill Bejerano, David Haussler, Mathieu Blanchette
Into the heart of darkness: large-scale clustering of human non-coding DNA. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Gill Bejerano
Algorithms for variable length Markov chain modeling. Bioinform. 20 (5) (2004)
Gill Bejerano, Nir Friedman, Naftali Tishby
Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical Data. J. Comput. Biol. 11 (5) (2004)
Gill Bejerano
Efficient exact value computation and applications to biosequence analysis. RECOMB (2003)
Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby
Discriminative Feature Selection via Multiclass Variable Memory Markov Model. EURASIP J. Adv. Signal Process. 2003 (2) (2003)
Shlomo Dubnov, Gérard Assayag, Olivier Lartillot, Gill Bejerano
Using Machine-Learning Methods for Musical Style Modeling. Computer 36 (10) (2003)
Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby
Discriminative Feature Selection via Multiclass Variable Memory Markov Model. ICML (2002)
Ruti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, Hanah Margalit
PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites. Nucleic Acids Res. 29 (1) (2001)
Olivier Lartillot, Shlomo Dubnov, Gérard Assayag, Gill Bejerano
Automatic Modeling of Musical Style. ICMC (2001)
Yoseph Barash, Gill Bejerano, Nir Friedman
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites. WABI (2001)
Gill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby
Markovian domain fingerprinting: statistical segmentation of protein sequences. Bioinform. 17 (10) (2001)
Gill Bejerano, Golan Yona
Variations on probabilistic suffix trees: statistical modeling and prediction of protein families. Bioinform. 17 (1) (2001)
Yevgeny Seldin, Gill Bejerano, Naftali Tishby
Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov Sources. ICML (2001)
Alberto Apostolico, Gill Bejerano
Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space. RECOMB (2000)
Alberto Apostolico, Gill Bejerano
Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space. J. Comput. Biol. 7 (3-4) (2000)
Gill Bejerano, Golan Yona
Modeling protein families using probabilistic suffix trees. RECOMB (1999)