Yatish Turakhia

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 19

Top Topics

Advances In Data Mining

Comparative Genomics

Sequence Alignment

Top Venues

J. Open Source Softw.

Publications

Sumit Walia, Cheng Ye, Arkid Bera, Dhruvi Lodhavia, Yatish Turakhia
TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers. HPCA (2024)
Kyle Smith, Cheng Ye, Yatish Turakhia
Tracking and curating putative SARS-CoV-2 recombinants with RIVET. Bioinform. 39 (9) (2023)
Weiwen Wang, James Barbetti, Thomas Wong, Bryan Thornlow, Russell Corbett-Detig, Yatish Turakhia, Robert Lanfear, Bui Quang Minh
DecentTree: scalable Neighbour-Joining for the genomic era. Bioinform. 39 (9) (2023)
Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. Bioinform. 38 (15) (2022)
Yatish Turakhia
HiCOMB 2022 Invited Speaker: Pandemic-scale Phylogenetics. IPDPS Workshops (2022)
Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets. PLoS Comput. Biol. 18 (4) (2022)
Jakob McBroome, Yatish Turakhia, Russell Corbett-Detig
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees. J. Open Source Softw. 7 (77) (2022)
Alexander Kramer, Yatish Turakhia, Russell Corbett-Detig
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees. J. Open Source Softw. 6 (66) (2021)
Sneha D. Goenka, Yatish Turakhia, Benedict Paten, Mark Horowitz
SegAlign: a scalable GPU-based whole genome aligner. SC (2020)
William J. Dally, Yatish Turakhia, Song Han
Domain-specific hardware accelerators. Commun. ACM 63 (7) (2020)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Coprocessor. IEEE Micro 39 (3) (2019)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. USENIX Annual Technical Conference (2019)
Roman Snytsar, Yatish Turakhia
Parallel Approach to Sliding Window Sums. ICA3PP (2) (2019)
Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup. HPCA (2019)
Roman Snytsar, Yatish Turakhia
Parallel approach to sliding window sums. CoRR (2018)
Yatish Turakhia, Gill Bejerano, William J. Dally
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. ASPLOS (2018)
Yatish Turakhia, Subhasis Das, Tor M. Aamodt, William J. Dally
HoLiSwap: Reducing Wire Energy in L1 Caches. CoRR (2017)
Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu
Thread Progress Equalization: Dynamically Adaptive Power-Constrained Performance Optimization of Multi-Threaded Applications. IEEE Trans. Computers 66 (4) (2017)
Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu
Thread Progress Equalization: Dynamically Adaptive Power and Performance Optimization of Multi-threaded Applications. CoRR (2016)
Vinay B. Y. Kumar, Pinalkumar Engineer, Mandar Datar, Yatish Turakhia, Saurabh Agarwal, Sanket Diwale, Sachin B. Patkar
Framework for Application Mapping over Packet-Switched Network of FPGAs: Case Studies. CoRR (2015)
Bharathwaj Raghunathan, Yatish Turakhia, Siddharth Garg, Diana Marculescu
Cherry-picking: exploiting process variations in dark-silicon homogeneous chip multi-processors. DATE (2013)
Yatish Turakhia, Bharathwaj Raghunathan, Siddharth Garg, Diana Marculescu
HaDeS: architectural synthesis for heterogeneous dark silicon chip multi-processors. DAC (2013)