matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2.
Cheng YeBryan ThornlowAngie S. HinrichsAlexander KramerCade MirchandaniDevika TorviRobert LanfearRussell Corbett-DetigYatish TurakhiaPublished in: Bioinform. (2022)
Keyphrases
- optimization method
- optimization algorithm
- optimization methods
- optimization process
- genetic algorithm
- differential evolution
- simulated annealing
- evolutionary algorithm
- online learning
- global optimum
- optimization procedure
- metaheuristic
- particle swarm
- nonlinear optimization
- nelder mead simplex
- real time
- parallel processing
- tree structure
- hybrid algorithm
- index structure
- parallel implementation
- objective function
- gaussian mixture model