Nick Goldman

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 3

Top Topics

Phylogenetic Analysis

Top Venues

PLoS Comput. Biol.

Publications

Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets. PLoS Comput. Biol. 18 (4) (2022)
Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk. PLoS Comput. Biol. 17 (1) (2021)
Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22 (1) (2021)
Charlotte Jarvis, Nick Goldman
Music of the Spheres. EVA (2015)
Roland F. Schwarz, Anne Trinh, Botond Sipos, James D. Brenton, Nick Goldman, Florian Markowetz
Phylogenetic Quantification of Intra-tumour Heterogeneity. PLoS Comput. Biol. 10 (4) (2014)
Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. PLoS Comput. Biol. 9 (12) (2013)
Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust, Botond Sipos, Ewan Birney
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA. Nat. 494 (7435) (2013)
Tim Massingham, Nick Goldman
Error-correcting properties of the SOLiD Exact Call Chemistry. BMC Bioinform. 13 (2012)
Ari Löytynoja, Albert J. Vilella, Nick Goldman
Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm. Bioinform. 28 (13) (2012)
Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment. BMC Bioinform. 12 (2011)
Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham
-mer Spectra: Models and Modalities. RECOMB (2010)
Ari Löytynoja, Nick Goldman
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. BMC Bioinform. 11 (2010)
Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia
Determination and validation of principal gene products. Bioinform. 24 (1) (2008)
Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. Nucleic Acids Res. 34 (Database-Issue) (2006)
Peter S. Klosterman, Andrew V. Uzilov, Yuri R. Bendaña, Robert K. Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian H. Holmes
XRate: a fast prototyping, training and annotation tool for phylo-grammars. BMC Bioinform. 7 (2006)
Simon Whelan, Paul I. W. de Bakker, Nick Goldman
Pandit: a database of protein and associated nucleotide domains with inferred trees. Bioinform. 19 (12) (2003)
Tim Massingham, Nick Goldman
EDIBLE: experimental design and information calculations in phylogenetics. Bioinform. 16 (3) (2000)
Michael Schöniger, Nick Goldman
The Performance of Transversion Based Distance Estimates. German Conference on Bioinformatics (1996)