Nicolas Rodriguez

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 7

Top Topics

Poses Challenges

Computational Model

Markup Language

Systems Biology

Top Venues

Nucleic Acids Res.

BMC Syst. Biol.

Publications

Marie Collet, Nicolas Rodriguez, Selma Baati, Alain Husson, Eddy Renaud, Kevin Caillaud, Yves Le Gat
Understanding the leakage process for multi-scale water infrastructure asset management: necessity for a dialogue between sociological and data sciences. CoRR (2023)
Pedro Julián, Athanasios Andreou, Martin Villemur, Nicolas Rodriguez
Simplicial computation: A methodology to compute vector-vector multiplications with reduced complexity. Int. J. Circuit Theory Appl. 49 (11) (2021)
Rahuman S. Malik-Sheriff, Mihai Glont, Tung V. N. Nguyen, Krishna Tiwari, Matthew G. Roberts, Ashley Xavier, Manh T. Vu, Jinghao Men, Matthieu Maire, Sarubini Kananathan, Emma L. Fairbanks, Johannes P. Meyer, Chinmay Arankalle, Thawfeek M. Varusai, Vincent Knight-Schrijver, Lu Li, Corina Dueñas-Roca, Gaurhari Dass, Sarah M. Keating, Young M. Park, Nicola Buso, Nicolas Rodriguez, Michael Hucka, Henning Hermjakob
BioModels - 15 years of sharing computational models in life science. Nucleic Acids Res. 48 (Database-Issue) (2020)
Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J. Integr. Bioinform. 17 (2-3) (2020)
Nicolas Rodriguez, Pedro Julián, Eduardo Paolini
A Simplicial Piecewise Linear Approach for Efficient Hardware Realization of Neural Networks : (Invited Presentation). CISS (2019)
Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob
BioModels: expanding horizons to include more modelling approaches and formats. Nucleic Acids Res. 46 (Database-Issue) (2018)
Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon, Kedar Nath Natarajan, David Tolnay, Melanie I. Stefan, Chris T. A. Evelo, Nicolas Le Novère
The systems biology format converter. BMC Bioinform. 17 (2016)
Vijayalakshmi Chelliah, Nick S. Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah M. Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M. Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe
BioModels: ten-year anniversary. Nucleic Acids Res. 43 (Database-Issue) (2015)
Nicolas Rodriguez, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag, Jakob Matthes, Jan Rudolph, Finja Wrzodek, Eugen Netz, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek, Sebastian Fröhlich, Nathan E. Lewis, Chris J. Myers, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka, Andreas Dräger
JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinform. 31 (20) (2015)
Frank T. Bergmann, Nicolas Rodriguez, Nicolas Le Novère
COMBINE Archive Specification Version 1. J. Integr. Bioinform. 12 (2) (2015)
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15 (2014)
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive: One File To Share Them All. CoRR (2014)
Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger
The systems biology simulation core algorithm. BMC Syst. Biol. 7 (2013)
Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7 (2013)
Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7 (2013)
Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez, Nicolas Le Novère, Andreas Zell
Qualitative translation of relations from BioPAX to SBML qual. Bioinform. 28 (20) (2012)
Marine Dumousseau, Nicolas Rodriguez, Nick S. Juty, Nicolas Le Novère
MELTING, a flexible platform to predict the melting temperatures of nucleic acids. BMC Bioinform. 13 (2012)
Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka
JSBML: a flexible Java library for working with SBML. Bioinform. 27 (15) (2011)
Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I. Stefan, Jacky L. Snoep, Michael Hucka, Nicolas Le Novère, Camille Laibe
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst. Biol. 4 (2010)
Vijayalakshmi Chelliah, Lukas Endler, Nick S. Juty, Camille Laibe, Chen Li, Nicolas Rodriguez, Nicolas Le Novère
Data Integration and Semantic Enrichment of Systems Biology Models and Simulations. DILS (2009)
Nicolas Rodriguez, Marco Donizelli, Nicolas Le Novère
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML). BMC Bioinform. 8 (2007)
Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. Nucleic Acids Res. 34 (Database-Issue) (2006)