Jonathan Cooper

Publication Activity (10 Years)

Years Active: 1993-2023
Publications (10 Years): 12

Top Topics

Activity Recognition

Top Venues

J. Integr. Bioinform.

PLoS Comput. Biol.

Publications

Corina Sas, Yojana Lotankar, Rosalind Adam, Katherine J. Bradbury, Jonathan Cooper, Derek L. Hill, Veronica Martinez, Daniel Powell
"A Switch Went off in my Whole Body": Lived Experiences of Fatigue and Post-Exertional Malaise in Long Covid. CHI Extended Abstracts (2023)
Michael Clerx, Michael T. Cooling, Jonathan Cooper, Alan Garny, Keri R. Moyle, David P. Nickerson, Poul M. F. Nielsen, Hugh Sorby
CellML 2.0.1. J. Integr. Bioinform. 20 (1) (2023)
Yao Ge, Jingyan Wang, Shibo Li, Liyuan Qi, Shuyuan Zhu, Jonathan Cooper, Muhammad Ali Imran, Qammer H. Abbasi
WiFi sensing of Human Activity Recognition using Continuous AoA-ToF Maps. WCNC (2023)
Shibo Li, Yao Ge, Minjian Shentu, Shuyuan Zhu, Muhammad Imran, Qammer H. Abbasi, Jonathan Cooper
Human Activity Recognition based on Collaboration of Vision and WiFi Signals. UCET (2021)
Yao Ge, Shibo Li, Minjian Shentu, Ahmad Taha, Shuyuan Zhu, Jonathan Cooper, Muhammad Ali Imran, Qammer H. Abbasi
A Doppler-based Human Activity Recognition System using WiFi Signals. IEEE SENSORS (2021)
Michael Clerx, Michael T. Cooling, Jonathan Cooper, Alan Garny, Keri R. Moyle, David P. Nickerson, Poul M. F. Nielsen, Hugh Sorby
CellML 2.0. J. Integr. Bioinform. 17 (2-3) (2020)
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5 (47) (2020)
Yishi Liu, Xiwang Dong, Zhang Ren, Jonathan Cooper
Fault-tolerant control for commercial aircraft with actuator faults and constraints. J. Frankl. Inst. 356 (7) (2019)
Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). J. Integr. Bioinform. 15 (1) (2018)
Joanna Lewis, Charles E. Breeze, Jane Charlesworth, Oliver J. Maclaren, Jonathan Cooper
Where next for the reproducibility agenda in computational biology? BMC Syst. Biol. 10 (2016)
Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11 (4) (2015)
Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. J. Integr. Bioinform. 12 (2) (2015)
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15 (2014)
Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper, Joe Pitt-Francis
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28 (1) (2014)
James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10 (3) (2014)
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive: One File To Share Them All. CoRR (2014)
Jonathan Cooper, James M. Osborne
Connecting Models to Data in Multiscale Multicellular Tissue Simulations. ICCS (2013)
Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9 (3) (2013)
David Johnson, Jonathan Cooper, Steve McKeever
TumorML: Concept and requirements of an in silico cancer modelling markup language. EMBC (2011)
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7 (4) (2011)
Jonathan Cooper, Jonathan P. Whiteley, David J. Gavaghan
A Posteriori Error Analysis for the Use of Lookup Tables in Cardiac Electrophysiology Simulations. SIAM J. Sci. Comput. 32 (4) (2010)
Andrew K. Miller, Justin Marsh, Adam Reeve, Alan Garny, Randall Britten, Matt D. B. Halstead, Jonathan Cooper, David P. Nickerson, Poul M. F. Nielsen
An overview of the CellML API and its implementation. BMC Bioinform. 11 (2010)
Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180 (12) (2009)
Jonathan Cooper, Steve McKeever
A model-driven approach to automatic conversion of physical units. Softw. Pract. Exp. 38 (4) (2008)
Jonathan Cooper, Steve McKeever
Experience report: a Haskell interpreter for cellML. ICFP (2007)
Jonathan Cooper, Steve McKeever, Alan Garny
On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations. PEPM (2006)
Jonathan Cooper
Engaging the Visitor: Relevance, Participation and Motivation in Hypermedia Design. ICHIM (1993)