Daniel A. Beard

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 3

Top Topics

Interaction Networks

Computational Models

Graphics Processing Units

Coronary Artery

Top Venues

PLoS Comput. Biol.

Algorithms Mol. Biol.

Publications

Andrew D. Marquis, Filip Jezek, David J. Pinsky, Daniel A. Beard
Hypoxic pulmonary vasoconstriction as a regulator of alveolar-capillary oxygen flux: A computational model of ventilation-perfusion matching. PLoS Comput. Biol. 17 (5) (2021)
Michael A. Moxley, Kalyan C. Vinnakota, Jason N. Bazil, Nathan R. Qi, Daniel A. Beard
Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats. PLoS Comput. Biol. 14 (2) (2018)
Raghuram Thiagarajan, Amir Alavi, Jagdeep T. Podichetty, Jason N. Bazil, Daniel A. Beard
The feasibility of genome-scale biological network inference using Graphics Processing Units. Algorithms Mol. Biol. 12 (1) (2017)
Klas H. Pettersen, Scott M. Bugenhagen, Javaid Nauman, Daniel A. Beard, Stig W. Omholt
Arterial Stiffening Provides Sufficient Explanation for Primary Hypertension. PLoS Comput. Biol. 10 (5) (2014)
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7 (4) (2011)
Xin Li, Fan Wu, Feng Qi, Daniel A. Beard
A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway. Database J. Biol. Databases Curation 2011 (2011)
Fan Wu, Daniel A. Beard
Roles of the creatine kinase system and myoglobin in maintaining energetic state in the working heart. BMC Syst. Biol. 3 (2009)
Dexuan Xie, Ranjan K. Dash, Daniel A. Beard
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model. J. Comput. Phys. 228 (20) (2009)
Joep Vanlier, Fan Wu, Feng Qi, Kalyan C. Vinnakota, Yu Han, Ranjan K. Dash, F. Yang, Daniel A. Beard
BISEN: Biochemical Simulation Environment. Bioinform. 25 (6) (2009)
Daniel A. Beard, Martin J. Kushmerick
Strong Inference for Systems Biology. PLoS Comput. Biol. 5 (8) (2009)
Feng Qi, Ranjan K. Dash, Yu Han, Daniel A. Beard
Generating rate equations for complex enzyme systems by a computer-assisted systematic method. BMC Bioinform. 10 (2009)
William J. Heuett, Daniel A. Beard, Hong Qian
Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory. BMC Syst. Biol. 2 (2008)
Daniel A. Beard
Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation. PLoS Comput. Biol. 2 (1) (2006)
Daniel A. Beard
Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Energy Metabolism. PLoS Comput. Biol. 2 (9) (2006)
Daniel A. Beard
A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation. PLoS Comput. Biol. 1 (4) (2005)
Qing Zhang, Daniel A. Beard, Tamar Schlick
Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm. J. Comput. Chem. 24 (16) (2003)
Tamar Schlick, Daniel A. Beard, Jing Huang, Daniel Strahs, Xiaoliang Qian
Computational challenges in simulating large DNA over long times. Comput. Sci. Eng. 2 (6) (2000)