Edda Klipp

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 16

Top Topics

Quantitative Analysis

Systems Biology

Gene Expression

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Willow Carretero Chavez, Marcus Krantz, Edda Klipp, Irina Kufareva
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models. BMC Bioinform. 24 (1) (2023)
Ulrike Münzner, Tomoya Mori, Marcus Krantz, Edda Klipp, Tatsuya Akutsu
Identification of periodic attractors in Boolean networks using a priori information. PLoS Comput. Biol. 18 (1) (2022)
Jorin Diemer, Jens Hahn, Björn Goldenbogen, Karin Müller, Edda Klipp
Sperm migration in the genital tract - In silico experiments identify key factors for reproductive success. PLoS Comput. Biol. 17 (7) (2021)
Stephan O. Adler, Edda Klipp
Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality. Entropy 22 (1) (2020)
Maria Krantz, Edda Klipp
Moonlighting proteins - an approach to systematize the concept. Silico Biol. 13 (3-4) (2020)
Andrea Auconi, Andrea Giansanti, Edda Klipp
Information Thermodynamics for Time Series of Signal-Response Models. Entropy 21 (2) (2019)
Arturo Blazquez-Navarro, Thomas Schachtner, Ulrik Stervbo, Anett Sefrin, Maik Stein, Timm H. Westhoff, Petra Reinke, Edda Klipp, Nina Babel, Avidan U. Neumann, Michal Or-Guil
Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach. PLoS Comput. Biol. 14 (5) (2018)
Wolfgang Giese, Gregor Milicic, Andreas Schröder, Edda Klipp
Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction. PLoS Comput. Biol. 14 (4) (2018)
Josch Pauling, Edda Klipp
Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks. J. Integr. Bioinform. 13 (1) (2016)
Katarzyna M. Tyc, Sanna E. Herwald, Jennifer A. Hogan, Jessica V. Pierce, Edda Klipp, Carol A. Kumamoto
colonization dynamics reveals host status-responsive gene expression. BMC Syst. Biol. 10 (2016)
Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister
SBtab: a flexible table format for data exchange in systems biology. Bioinform. 32 (16) (2016)
Susanne Gerber, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala, Lana Shabala, Edda Klipp
. PLoS Comput. Biol. 12 (1) (2016)
Max Schelker, Caroline Maria Mair, Fabian Jolmes, Robert-William Welke, Edda Klipp, Andreas Herrmann, Max Flöttmann, Christian Sieben
Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency. PLoS Comput. Biol. 12 (10) (2016)
Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. BMC Syst. Biol. 9 (2015)
Thomas W. Spiesser, Clemens Kühn, Marcus Krantz, Edda Klipp
mRNA Can Constitute a Growth Rate Dependent Daughter Sizer. PLoS Comput. Biol. 11 (4) (2015)
Andreas Raue, Bernhard Steiert, Max Schelker, Clemens Kreutz, Tim Maiwald, Helge Hass, Joep Vanlier, Christian Tönsing, Lorenz Adlung, Raphael Engesser, Wolfgang Mader, Tim Heinemann, Jan Hasenauer, Marcel Schilling, Thomas Höfer, Edda Klipp, Fabian J. Theis, Ursula Klingmüller, Birgit Schoeberl, Jens Timmer
Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. Bioinform. 31 (21) (2015)
Gundián M. de Hijas-Liste, Edda Klipp, Eva Balsa-Canto, Julio R. Banga
Global dynamic optimization approach to predict activation in metabolic pathways. BMC Syst. Biol. 8 (2014)
Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser
SensA: web-based sensitivity analysis of SBML models. Bioinform. 30 (19) (2014)
Christian Diener, Gabriele Schreiber, Wolfgang Giese, Gabriel del Rio, Andreas Schröder, Edda Klipp
Yeast Mating and Image-Based Quantification of Spatial Pattern Formation. PLoS Comput. Biol. 10 (6) (2014)
Matthias Bock, Till Scharp, Chaitanya Talnikar, Edda Klipp
BooleSim: an interactive Boolean network simulator. Bioinform. 30 (1) (2014)
Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz
Reaction-contingency based bipartite Boolean modelling. BMC Syst. Biol. 7 (2013)
Elzbieta Petelenz-Kurdziel, Clemens Kühn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann, Edda Klipp
Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress. PLoS Comput. Biol. 9 (6) (2013)
Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, Thomas Handorf
Biographer: web-based editing and rendering of SBGN compliant biochemical networks. Bioinform. 29 (11) (2013)
Thomas Handorf, Edda Klipp
Modeling mechanistic biological networks: An advanced Boolean approach. Bioinform. 28 (4) (2012)
Marvin Schulz, Edda Klipp, Wolfram Liebermeister
Propagating semantic information in biochemical network models. BMC Bioinform. 13 (2012)
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7 (4) (2011)
Szymon Stoma, Martina Fröhlich, Susanne Gerber, Edda Klipp
STSE: Spatio-Temporal Simulation Environment Dedicated to Biology. BMC Bioinform. 12 (2011)
Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister
Annotation and merging of SBML models with semanticSBML. Bioinform. 26 (3) (2010)
Wolfram Liebermeister, Jannis Uhlendorf, Edda Klipp
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. Bioinform. 26 (12) (2010)
Clemens Kühn, Christoph K. Wierling, Alexander Kühn, Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka
Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. BMC Syst. Biol. 3 (2009)
Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinform. 10 (S-12) (2009)
Marvin Schulz, Barbara M. Bakker, Edda Klipp
TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinform. 10 (2009)
Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp
SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool. BMC Bioinform. 9 (2008)
Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina
/S Network. PLoS Comput. Biol. 3 (4) (2007)
Zhike Zi, Edda Klipp
SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Bioinform. 22 (21) (2006)