Dagmar Waltemath

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 61

Top Topics

Systems Biology

Frequent Patterns

Computational Model

Top Venues

J. Integr. Bioinform.

Briefings Bioinform.

Publications

Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19. Datenbank-Spektrum 24 (2) (2024)
Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21 (1) (2024)
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. J. Integr. Bioinform. 21 (1) (2024)
Judith A. H. Wodke, Ron Henkel, Dagmar Waltemath
MeDaX project plan: How to sustainably improve biomedical (research) data management. SWAT4HCLS (2023)
Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Dagmar Waltemath, Sylvia Thun
Experiences from compiling a FAIR survey in the German Network University Medicine. SWAT4HCLS (2023)
Dagmar Waltemath, Hilke Beelich, Philipp Töpfer, Corinna Bergelt, Agnes Flöel, Elpiniki Katsari, Elke Krüger, Stine Lutze, Michael Schöner, Sebastian Paschen, Moritz Roloff, Hanne Roth, Sylvia Stracke
Representing Sex and Gender Information in Biomedical Research. MIE (2023)
Kirubel Biruk Shiferaw, Atinkut Zeleke, Dagmar Waltemath
Assessing the FAIRness of Deep Learning Models in Cardiovascular Disease Using Computed Tomography Images: Data and Code Perspective. MIE (2023)
Ron Henkel, Dagmar Waltemath
Contributions to the reuse and reproducibility of computational biology models. SWAT4HCLS (2023)
Jens Dierkes, Birte Lindstädt, Ulrich Sax, Canan Hastik, Julia Fürst, Tanja Hörner, Sebastian Klammt, Ines Perrar, Iris Pigeot, Katja Restel, Carsten Oliver Schmidt, Aliaksandra Shutsko, Dagmar Waltemath, Atinkut Zeleke
Building the Next Generation of Data Savvy Biomedical Researchers. CoRDI (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. 20 (1) (2023)
Dagmar Waltemath, Esther Thea Inau, Lea Michaelis, Venkata P. Satagopam, Irina Balaur
Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. CoRDI (2023)
Dagmar Krefting, Nico T. Mutters, Rüdiger Pryss, Martin Sedlmayr, Martin Boeker, Christoph Dieterich, Carolin Koll, Martina Mueller, Anna Slagman, Dagmar Waltemath, Antje Wulff, Sven Zenker
Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers. MedInfo (2023)
Felix Menzel, Dagmar Waltemath, Ron Henkel
Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set. MIE (2023)
Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Christoph Dieterich, Tim Johann, Dagmar Krefting, Dagmar Waltemath, Sylvia Thun
Insights into the FAIRness of the German Network University Medicine: A Survey. MIE (2023)
Max Schröder, Sascha Genehr, Rüdiger Köhling, Stefan Schmidt, Ralf Schneider, Sascha Spors, Gero Szepannek, Dagmar Waltemath, Frank Krüger
A Survey on the Current Status of Research Data Management in Mecklenburg-Vorpommern Preliminary Results for a Questionnaire Study Among Researchers. CoRDI (2023)
Christian Draeger, Erik Tute, Carsten Oliver Schmidt, Dagmar Waltemath, Martin Boeker, Alfred Winter, Matthias Löbe
Identifying Relevant FHIR Elements for Data Quality Assessment in the German Core Data Set. MIE (2023)
Esther Thea Inau, Atinkut Zeleke, Dagmar Waltemath
Harvesting the Low Hanging Fruits From the FAIRtree. MIE (2023)
Lea Gütebier, Ron Henkel, Christian Niklas, Dagmar Waltemath
Exploring Use Cases for CovidGraph. MIE (2023)
Esther Thea Inau, Angela Dedie, Ivona Anastasova, Andreas Birkenfeld, Brigitte Fröhlich, Martin Hrabe de Angelis, Michael Roden, Renate Schick, Yaroslav Zdravomyslov, Atinkut Zeleke, Dagmar Waltemath, Martin Preusse
First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center for Diabetes Research. SWAT4HCLS (2023)
Kerstin Gierend, Judith A. H. Wodke, Sascha Genehr, Robert Gött, Ron Henkel, Frank Krüger, Markus Mandalka, Lea Michaelis, Alexander Scheuerlein, Max Schröder, Atinkut Zeleke, Dagmar Waltemath
TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities. WWW (Companion Volume) (2023)
Ron Henkel, Lea Gütebier, Dagmar Waltemath
CovidGraph: Integrating COVID-19 Data. MIE (2022)
Kirubel Biruk Shiferaw, Dagmar Waltemath, Atinkut Zeleke
Disparities in Regional Publication Trends on the Topic of Artificial Intelligence in Biomedical Science Over the Last Five Years: A Bibliometric Analysis. MIE (2022)
Lea Gütebier, Tim Bleimehl, Ron Henkel, Jamie Munro, Sebastian Müller, Axel Morgner, Jakob Laenge, Anke Pachauer, Alexander Erdl, Jens Weimar, Kirsten Walther Langendorf, Vincent Vialard, Thorsten Liebig, Martin Preusse, Dagmar Waltemath, Alexander Jarasch
CovidGraph: a graph to fight COVID-19. Bioinform. 38 (20) (2022)
Anna Niarakis, Dagmar Waltemath, James Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone
. Briefings Bioinform. 23 (4) (2022)
Esther Thea Inau, Reginald Nalugala, William Muhadi Nandwa, Fredrick Obwanda, Antony Wachira, Dagmar Waltemath, Antonio Cartaxo, Atinkut Zeleke
Investigating the FAIR Equivalency in National Guidance in Health in Kenya. EFMI-STC (2021)
John H. Gennari, Matthias König, Goksel Misirli, Maxwell Lewis Neal, David P. Nickerson, Dagmar Waltemath
OMEX metadata specification (version 1.2). J. Integr. Bioinform. 18 (3) (2021)
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. J. Integr. Bioinform. 18 (3) (2021)
Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies. MIE (2021)
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. 18 (3) (2021)
Martin Preusse, Alexander Jarasch, Tim Bleimehl, Sebastian Muller, Jamie Munro, Lea Gutebier, Ron Henkel, Dagmar Waltemath
COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models. SEA-Data@VLDB (2021)
Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Briefings Bioinform. 22 (5) (2021)
Søren Brunak, Catherine Bjerre Collin, Katharina Eva Ó Cathaoir, Martin Golebiewski, Marc Kirschner, Ingrid Kockum, Heike Moser, Dagmar Waltemath
Towards standardization guidelines for in silico approaches in personalized medicine. J. Integr. Bioinform. 17 (2-3) (2020)
Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17 (2-3) (2020)
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J. Integr. Bioinform. 17 (2-3) (2020)
Maxwell Lewis Neal, John H. Gennari, Dagmar Waltemath, David P. Nickerson, Matthias König
Open modeling and exchange (OMEX) metadata specification version 1.0. J. Integr. Bioinform. 17 (2-3) (2020)
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20 (2) (2019)
Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. J. Integr. Bioinform. 16 (2) (2019)
Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16 (2) (2019)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks: a workflow. Database J. Biol. Databases Curation 2018 (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 19 (1) (2018)
Martin Scharm, Tom Gebhardt, Vasundra Touré, Andrea Bagnacani, Ali Salehzadeh-Yazdi, Olaf Wolkenhauer, Dagmar Waltemath
Evolution of computational models in BioModels Database and the Physiome Model Repository. BMC Syst. Biol. 12 (1) (2018)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. J. Integr. Bioinform. 15 (1) (2018)
Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). J. Integr. Bioinform. 15 (1) (2018)
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15 (1) (2018)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. J. Integr. Bioinform. 15 (1) (2018)
Vasundra Touré, Nicolas Le Novère, Dagmar Waltemath, Olaf Wolkenhauer
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation. PLoS Comput. Biol. 14 (2) (2018)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks - a workflow. PeerJ Prepr. 6 (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 18 (5) (2017)
Martin Peters, Johann J. Eicher, David D. van Niekerk, Dagmar Waltemath, Jacky L. Snoep
The JWS online simulation database. Bioinform. 33 (10) (2017)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks - a workflow. PeerJ Prepr. 5 (2017)
Frank T. Bergmann, David P. Nickerson, Dagmar Waltemath, Martin Scharm
SED-ML web tools: generate, modify and export standard-compliant simulation studies. Bioinform. 33 (8) (2017)
Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath
A brief history of COMBINE. WSC (2017)
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. 13 (3) (2016)
Martin Scharm, Dagmar Waltemath, Pedro Mendes, Olaf Wolkenhauer
COMODI: an ontology to characterise differences in versions of computational models in biology. J. Biomed. Semant. 7 (2016)
Martin Scharm, Olaf Wolkenhauer, Dagmar Waltemath
An algorithm to detect and communicate the differences in computational models describing biological systems. Bioinform. 32 (4) (2016)
Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
Challenges and opportunities for system biology standards and tools in medical research. ODLS (2016)
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor Saqi, Ron Henkel, Johann Pellet, Charles Auffray
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17 (2016)
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63 (10) (2016)
Ron Henkel, Fabienne Lambusch, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Dagmar Waltemath
Finding patterns in biochemical reaction networks. PeerJ Prepr. 4 (2016)
Martin Scharm, Dagmar Waltemath
embryos. F1000Research 5 (2016)
Dagmar Waltemath, Olaf Wolkenhauer
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. IEEE Trans. Biomed. Eng. 63 (10) (2016)
Martin Scharm, Dagmar Waltemath
Extracting reproducible simulation studies from model repositories using the combinearchive toolkit. BTW Workshops (2015)
Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise
Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. 12 (2) (2015)
Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. J. Integr. Bioinform. 12 (2) (2015)
Ron Henkel, Olaf Wolkenhauer, Dagmar Waltemath
Combining computational models, semantic annotations and simulation experiments in a graph database. Database J. Biol. Databases Curation 2015 (2015)
Rebekka Alm, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, Ron Henkel
Annotation-based feature extraction from sets of SBML models. J. Biomed. Semant. 6 (2015)
Ron Henkel, Fabienne Lambusch, Dagmar Waltemath
Finding pattern in biochemical reaction networks - a sub-graph mining approach. PeerJ Prepr. 3 (2015)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. J. Integr. Bioinform. 12 (2) (2015)
Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath
The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results. SWAT4LS (2014)
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15 (2014)
Rebekka Alm, Dagmar Waltemath, Olaf Wolkenhauer, Ron Henkel
Annotation-Based Feature Extraction from Sets of SBML Models. DILS (2014)
Christian Rosenke, Dagmar Waltemath
How Can Semantic Annotations Support the Identification of Network Similarities? SWAT4LS (2014)
Ron Henkel, Dagmar Waltemath
MaSyMoS: Finding Hidden Treasures in Model Repositories. SWAT4LS (2014)
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive: One File To Share Them All. CoRR (2014)
Dagmar Waltemath, Ron Henkel, Robert Hälke, Martin Scharm, Olaf Wolkenhauer
Improving the reuse of computational models through version control. Bioinform. 29 (6) (2013)
Ron Henkel, Nicolas Le Novère, Olaf Wolkenhauer, Dagmar Waltemath
Considerations of graph-based concepts to manage of computational biology models and associated simulations. GI-Jahrestagung (2012)
Dagmar Waltemath, Ron Henkel, Holger Meyer, Andreas Heuer
Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen. Datenbank-Spektrum 11 (1) (2011)
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7 (4) (2011)
Dagmar Waltemath, Richard R. Adams, Frank T. Bergmann, Michael Hucka, Fedor A. Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère
Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language. BMC Syst. Biol. 5 (2011)
Ron Henkel, Lukas Endler, Andre Peters, Nicolas Le Novère, Dagmar Waltemath
Ranked retrieval of Computational Biology models. BMC Bioinform. 11 (2010)