Björn Sommer

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 38

Top Topics

Biomedical Data

Virtual Reality

Visual Analysis

Top Venues

J. Integr. Bioinform.

Publications

Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21 (1) (2024)
Jan Byska, Michael Krone, Björn Sommer
Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023). Comput. Graph. 112 (2023)
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. 20 (1) (2023)
Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer
APL@voro - interactive visualization and analysis of cell membrane simulations. Bioinform. 39 (2) (2023)
Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber
Immersive Analytics with Abstract 3D Visualizations: A Survey. Comput. Graph. Forum 41 (1) (2022)
Björn Sommer, Daisuke Inoue, Marc Baaden
Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. J. Integr. Bioinform. 19 (2) (2022)
Kay Nieselt, Steffen Oeltze-Jafra, Thomas Schultz, Noeska N. Smit, Björn Sommer
Foreword. Comput. Graph. 108 (2022)
Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber
TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour. J. Vis. 24 (4) (2021)
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. 18 (3) (2021)
Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
32nd Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A (2021)
Björn Sommer
Hybrid Stereoscopic Photography - Analogue Stereo Photography meets the Digital Age with the StereoCompass app. SD&A (2021)
Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
31st Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A (2020)
Björn Sommer, Chang Hee Lee, Nat Martin, Vanna Savina Torrisi
Immersive Design Engineering. SD&A (2020)
Beatrice Giuliari, Manuel Kösters, Jan Zhou, Tim Dingersen, André J. Heissmann, Ralf Rotzoll, Jens Krüger, Alejandro Giorgetti, Björn Sommer
The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor. MolVa@Eurographics/EuroVis (2020)
Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17 (2-3) (2020)
Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber
TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data. VINCI (2019)
Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber
Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation. SD&A (2019)
Björn Sommer
The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development. J. Integr. Bioinform. 16 (3) (2019)
Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16 (2) (2019)
Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. 16 (4) (2019)
Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
30th Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A (2019)
Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer
Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. 15 (2) (2018)
Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer
Virtual Reality for Sensor Data Visualization and Analysis. ERVR (2018)
Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer
Stereoscopic Displays and Applications XXIX - Introduction. SD&A (2018)
Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer
Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility. CoRR (2018)
Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer
Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction. UMAP (Adjunct Publication) (2018)
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15 (1) (2018)
Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods
From Virtual Reality to Immersive Analytics in Bioinformatics. J. Integr. Bioinform. 15 (2) (2018)
Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer
3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender. VINCI (2018)
Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A (2017)
Björn Sommer, Falk Schreiber
Integration and virtual reality exploration of biomedical data with CmPI and VANTED. it Inf. Technol. 59 (4) (2017)
Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber
Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors. VCBM (2017)
Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. 14 (1) (2017)
Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen
DaTo: an atlas of biological databases and tools. J. Integr. Bioinform. 13 (4) (2016)
Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A (2016)
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. 13 (3) (2016)
Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang
Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation. BDVA (2016)
Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer
Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. J. Integr. Bioinform. 13 (4) (2016)
Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber
Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques. BDVA (2015)
Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise
Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. 12 (2) (2015)
Björn Sommer, Christian Bender, Tobias Hoppe, Christian Gamroth, Lukas Jelonek
Stereoscopic cell visualization: from mesoscopic to molecular scale. J. Electronic Imaging 23 (1) (2014)
Thomas Waltemate, Björn Sommer, Mario Botsch
Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. VCBM (2014)
Gunther Lukat, Björn Sommer, Jens Krüger
Membrane simulation analysis using Voronoi tessellation. J. Cheminformatics 6 (S-1) (2014)
Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise
Editorial. J. Integr. Bioinform. 10 (1) (2013)
Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11 (1) (2013)
Gunther Lukat, Jens Krüger, Björn Sommer
APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. J. Chem. Inf. Model. 53 (11) (2013)
Sebastian Rubert, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Alexander Schäfer, Jens Krüger, Björn Sommer
The GMX-Plugin for the CELLmicrocosmos MembraneEditor. J. Cheminformatics 4 (S-1) (2012)
Björn Sommer, Tim Dingersen, Christian Gamroth, Sebastian Schneider, Sebastian Rubert, Jens Krüger, Karl-Josef Dietz
CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. J. Chem. Inf. Model. 51 (5) (2011)
Björn Sommer, Tim Dingersen, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Sebastian Rubert, Alexander Schäfer, Jens Krüger
Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes. J. Cheminformatics 3 (S-1) (2011)
Björn Sommer, Tim Dingersen, Sebastian Schneider, Sebastian Rubert, Christian Gamroth
CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes. J. Cheminformatics 2 (S-1) (2010)
Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7 (1) (2010)
Björn Sommer, Jörn Künsemöller, Norbert Sand, Arne Husemann, Madis Rumming, Benjamin Kormeier
CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. BIOINFORMATICS (2010)