Vladimir A. Ivanisenko

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 15

Top Topics

Automatic Extraction

Scientific Literature

Top Venues

J. Integr. Bioinform.

J. Bioinform. Comput. Biol.

BMC Syst. Biol.

Publications

Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. J. Integr. Bioinform. 20 (3) (2024)
Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. 20 (3) (2024)
Haoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov, Ming Chen
Integrating omics databases for enhanced crop breeding. J. Integr. Bioinform. 20 (4) (2024)
Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostianov, Vladimir A. Ivanisenko
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. BMC Bioinform. (11) (2020)
Vladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression. BMC Bioinform. (1) (2019)
Ralf Hofestädt, Vladimir A. Ivanisenko
Integrative Analysis of Co-Morbid Multifactorial Diseases. J. Integr. Bioinform. 15 (4) (2018)
Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. 15 (4) (2018)
Tatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko
shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. J. Integr. Bioinform. 15 (4) (2018)
Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. J. Integr. Bioinform. 15 (4) (2018)
Elena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin
Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. J. Integr. Bioinform. 15 (4) (2018)
Olga V. Petrovskaya, Evgeny D. Petrovskiy, Inna N. Lavrik, Vladimir A. Ivanisenko
A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks. J. Bioinform. Comput. Biol. 15 (2) (2017)
Irina V. Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko
SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes. J. Bioinform. Comput. Biol. 15 (2) (2017)
Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. 9 (S-2) (2015)
Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. 9 (S-2) (2015)
Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
Permanent proteins in the urine of healthy humans during the Mars-500 experiment. J. Bioinform. Comput. Biol. 13 (1) (2015)
Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11 (1) (2013)
Konstantin Kozlov, Nikita Ivanisenko, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. PaCT (2013)
Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. 11 (3-4) (2012)
Nicolas Turenne, Evgeny S. Tiys, Vladimir A. Ivanisenko, Nikolay Yudin, Elena Ignatieva, Damien Valour, Séverine A. Degrelle, Isabelle Hue
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development. BioData Min. 5 (2012)
Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. 40 (Database-Issue) (2012)
Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7 (1) (2010)
Sergey S. Pintus, Eduard S. Fomin, Ivan S. Oshurkov, Vladimir A. Ivanisenko
Phylogenetic Analysis of the p53 and p63/p73 Gene Families. Silico Biol. 7 (3) (2007)
Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP (2007)
Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. 33 (Database-Issue) (2005)
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)