Ralf Hofestädt

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 25

Top Venues

J. Integr. Bioinform.

J. Bioinform. Comput. Biol.

eHealth

BMC Medical Informatics Decis. Mak.

University of Bonn, Germany (PHD)

Education History

University of Bonn, Germany

PHD

Publications

Yuriy L. Orlov, Ming Chen, Nikolay A. Kolchanov, Ralf Hofestädt
BGRS: bioinformatics of genome regulation and data integration. J. Integr. Bioinform. 20 (3) (2024)
Christoph Brinkrolf, Lennart Ochel, Ralf Hofestädt
VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology. Biosyst. 210 (2021)
Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21). J. Integr. Bioinform. 18 (4) (2021)
Md. Asif Ahsan, Yongjing Liu, Cong Feng, Ralf Hofestädt, Ming Chen
OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources. J. Integr. Bioinform. 18 (1) (2021)
Yuriy L. Orlov, Oxana B. Dobrovolskaya, Ming Chen, Ralf Hofestädt
Bioinformatics of genome regulation and structure - 2020 papers collection. J. Integr. Bioinform. 17 (4) (2020)
Ming Chen, Ralf Hofestädt, Jan Taubert
Integrative Bioinformatics: History and Future. J. Integr. Bioinform. 16 (3) (2019)
Yuriy L. Orlov, Ralf Hofestädt, Ancha V. Baranova
Systems biology research at BGRS-2018. BMC Syst. Biol. (1) (2019)
Yuriy L. Orlov, Ralf Hofestädt, Tatiana V. Tatarinova
Bioinformatics research at BGRS\SB-2018. J. Bioinform. Comput. Biol. 17 (1) (2019)
Lu Zhu, Ralf Hofestädt, Martin Ester
Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. 16 (4) (2019)
Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer
Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. 15 (2) (2018)
Ralf Hofestädt, Christoph Brinkrolf, Philo Reipke
OMPetri: A New Petri Net Simulation Environment Based on OpenModelica. ICBBT (2018)
Ralf Hofestädt, Vladimir A. Ivanisenko
Integrative Analysis of Co-Morbid Multifactorial Diseases. J. Integr. Bioinform. 15 (4) (2018)
Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. 15 (4) (2018)
Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways. GMDS (2018)
Tatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko
shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. J. Integr. Bioinform. 15 (4) (2018)
Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. J. Integr. Bioinform. 15 (4) (2018)
Elena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin
Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. J. Integr. Bioinform. 15 (4) (2018)
Paolo Romano, Ralf Hofestädt, Matthias Lange, Domenica D'Elia
The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. BMC Bioinform. 18 (S-5) (2017)
Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. J. Integr. Bioinform. 14 (1) (2017)
Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary. J. Bioinform. Comput. Biol. 15 (2) (2017)
Alban Shoshi, Ulrich Müller, Arben Shoshi, Venus Ogultarhan, Ralf Hofestädt
KALIS - An eHealth System for Biomedical Risk Analysis of Drugs. eHealth (2017)
Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. 14 (1) (2017)
Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen
DaTo: an atlas of biological databases and tools. J. Integr. Bioinform. 13 (4) (2016)
Venus Ogultarhan, Alban Shoshi, Rico Magnucki, Benjamin Kormeier, Ralf Hofestädt
KATIS: An eHealth System for Complementary Medicine. eHealth (2016)
Alban Shoshi, Tobias Hoppe, Benjamin Kormeier, Venus Ogultarhan, Ralf Hofestädt
GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data. BMC Medical Informatics Decis. Mak. 15 (2015)
Yuriy L. Orlov, Ralf Hofestädt, Nikolay A. Kolchanov
Introductory note for BGRS\SB-2014 special issue. J. Bioinform. Comput. Biol. 13 (1) (2015)
Alban Shoshi, Venus Ogultarhan, Tobias Hoppe, Benjamin Kormeier, Ulrich Müller, Ralf Hofestädt
Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping. J. Bioinform. Comput. Biol. 13 (1) (2015)
Christoph Brinkrolf, Sebastian Janowski, Benjamin Kormeier, Martin Lewinski, Klaus Hippe, Daniela Borck, Ralf Hofestädt
VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. J. Integr. Bioinform. 11 (2) (2014)
Ming Chen, Ralf Hofestädt
Open problems in Petri net modeling and simulation of biological systems. it Inf. Technol. 56 (2) (2014)
Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise
Editorial. J. Integr. Bioinform. 10 (1) (2013)
Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11 (1) (2013)
Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt
Computational Construction of Specialized Biological Networks. J. Bioinform. Comput. Biol. 11 (1) (2013)
Alban Shoshi, Arben Shoshi, Ralf Hofestädt
KAIS: Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionsprüfung. GI-Jahrestagung (2012)
Sabrina Proß, Bernhard Bachmann, Sebastian Janowski, Ralf Hofestädt
A new object-oriented Petri net simulation environment based on modelica. WSC (2012)
Ming Chen, Sridhar Hariharaputran, Ralf Hofestädt, Benjamin Kormeier, Sarah Spangardt
Petri net models for the semi-automatic construction of large scale biological networks. Nat. Comput. 10 (3) (2011)
Donglin Huang, Yiling Huang, Youhuang Bai, Dijun Chen, Ralf Hofestädt, Christian Klukas, Ming Chen
MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinform. 27 (23) (2011)
Wolfgang Müller, Ralf Hofestädt, Klaus A. Kuhn, Can Türker
Daten in den Lebenswissenschaften: Datenbanken als Kommunikationszentrum. GI-Jahrestagung (2011)
Ralf Hofestädt
Fundamental Features of Metabolic Computing. MICAI (2) (2011)
Benjamin Kormeier, Klaus Hippe, Ralf Hofestädt
Data Warehouses in Bioinformatics: Integration of Molecular Biological Data. it Inf. Technol. 53 (5) (2011)
Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestädt, Ming Chen
PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats. BIBM Workshops (2010)
Sebastian Janowski, Benjamin Kormeier, Thoralf Töpel, Klaus Hippe, Ralf Hofestädt, Nils Willassen, Rafael Friesen, Sebastian Rubert, Daniela Borck, Peik Haugen, Ming Chen
Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing. Silico Biol. 10 (1-2) (2010)
Klaus Hippe, Benjamin Kormeier, Thoralf Töpel, Sebastian Janowski, Ralf Hofestädt
DAWIS-M.D. - A Data Warehouse System for Metabolic Data. GI Jahrestagung (2) (2010)
Benjamin Kormeier, Klaus Hippe, Patrizio Arrigo, Thoralf Töpel, Sebastian Janowski, Ralf Hofestädt
Reconstruction of biological networks based on life science data integration. J. Integr. Bioinform. 7 (2) (2010)
Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. J. Integr. Bioinform. 7 (1) (2010)
Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt
Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. J. Integr. Bioinform. 7 (3) (2010)
Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7 (1) (2010)
Alfred Winter, Ralf Hofestädt, Klaus A. Kuhn
Informationssysteme für die translationale Gesundheitsforschung (Vorwort). GI Jahrestagung (1) (2010)
Wolfgang Müller, Ralf Hofestädt, Klaus A. Kuhn, Can Türker
Daten in den Lebenswissenschaften. Vom Papier über Datenbanken zur integrierten Informationsquelle (Vorwort). GI Jahrestagung (2) (2010)
Ralf Hofestädt, Ernst W. Mayr
Bioinformatik. Inform. Spektrum 32 (4) (2009)
Ralf Hofestädt, Klaus Kuhn, Wolfgang Müller, Can Türker
Daten in den Lebenswissenschaften - Vom Paper über Datenbanken zur integrierten Informationsquelle. GI Jahrestagung (2009)
Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. GI Jahrestagung (2009)
Thoralf Töpel, Benjamin Kormeier, Andreas Klassen, Ralf Hofestädt
BioDWH: A Data Warehouse Kit for Life Science Data Integration. J. Integr. Bioinform. 5 (2) (2008)
Thoralf Töpel, Jens Neumann, Ralf Hofestädt
A Medical Case-Based Reasoning Component for the Rare Metabolic Diseases Database Ramedis. CBMS (2007)
Ralf Hofestädt
Extended Backus-Systems for the Representation and Specification of the genome. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Sridhar Hariharaputran, Thoralf Töpel, Björn Brockschmidt, Ralf Hofestädt
VINEdb: a data warehouse for integration and interactive exploration of life science data. J. Integr. Bioinform. 4 (3) (2007)
B. Prins, Ralf Hofestädt
MILAN - A medical information-system linking agents to metabolic networks. J. Integr. Bioinform. 3 (2) (2006)
Ming Chen, Ralf Hofestädt
A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis. J. Biomed. Informatics 39 (2) (2006)
Ralf Hofestädt, Hans-Peter Lenhof
Molekulare Bioinformatik. it Inf. Technol. 46 (1) (2004)
Ming Chen, Ralf Hofestädt
An algorithm for linear metabolic pathway alignment. Silico Biol. 5 (2) (2004)
Ming Chen, Susana Lin, Ralf Hofestädt
STCDB: Signal Transduction Classification Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Julio Collado-Vides, Ralf Hofestädt, Christoph W. Sensen
04281 Abstracts Collection - Integrative Bioinformatics - Aspects of the Virtual Cell. Integrative Bioinformatics - Aspects of the Virtual Cell (2004)
Ralf Hofestädt
Preface - Dagstuhl Seminar on Integrative Bioinformatics. Silico Biol. 5 (2) (2004)
Andreas Freier, Ralf Hofestädt, Matthias Lange
IIUDB: An object-oriented system for modelling, integration and analysis of gene controlled metabolic networks. Silico Biol. 3 (1-2) (2003)
Nikolay A. Kolchanov, Ralf Hofestädt
The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. Silico Biol. 3 (1-2) (2003)
Ming Chen, Ralf Hofestädt
Quantitative Petri net model of gene regulated metabolic networks in the cell. Silico Biol. 3 (3) (2003)
Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz
Information Fusion and Metabolic Network Control. Gene Regulations and Metabolism (2002)
Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik
BioDataServer: A SQL-based service for the online integration of life science data. Silico Biol. 2 (2) (2002)
Ralf Hofestädt, Thoralf Töpel
Case-based Support of Information Retrieval and Analysis of Molecular Data. CBMS (2002)
Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. Silico Biol. 2 (3) (2002)
Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. 2 (2) (2002)
Ulrike Mischke, Uwe Scholz, Thoralf Töpel, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. MedInfo (2001)
Ralf Kauert, Thoralf Töpel, Uwe Scholz, Ralf Hofestädt
Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases. MedInfo (2001)
Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. German Conference on Bioinformatics (2001)
Ralf Hofestädt, Hans-Peter Lenhof
Workshop "Molekulare Bioinformatik". GI Jahrestagung (2000)
Jacob Köhler, Matthias Lange, Ralf Hofestädt, Steffen Schulze-Kremer
Logical and Semantic Database Integration. BIBE (2000)
Niels Grabe, Ralf Hofestädt
Predicting transcription factor binding sites by constructing context specific matrices. German Conference on Bioinformatics (1999)
Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz
MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. German Conference on Bioinformatics (1999)
Ralf Hofestädt, Ulrike Mischke, Manuela Prüß, Uwe Scholz
Metabolic Drug Pointing and Information Processing. MIE (1999)
Niels Grabe, Ralf Hofestädt
A promoter model based on different combinations of binding sites. German Conference on Bioinformatics (1998)
Ralf Hofestädt
A Integrative Molecular Information System. MedInfo (1998)
Ralf Hofestädt
Workshop: Molekulare Bioinformatik. GI Jahrestagung (1998)
Ralf Hofestädt, S. Thelen
Quantitative modeling of biochemical networks. Silico Biol. 1 (1) (1998)
Michael Höding, Ralf Hofestädt, Gunter Saake, Uwe Scholz
Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics. ADBIS (1998)
Ralf Hofestädt, Manuela Prüß, Uwe Scholz, Holger Urban
The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors. German Conference on Bioinformatics (1998)
Ralf Hofestädt, X. Huang, D. Beerbohm
Simulation of load balancing with cellular automata. Simul. Pract. Theory 4 (2-3) (1996)
Ralf Hofestädt, Markus Löffler, Thomas Lengauer
Editorial: Informatik in den Biowissenschaften. Informationstechnik Tech. Inform. 38 (5) (1996)
B. Gandomi, Ralf Hofestädt, Thomas Pfisterer
Metabolic Pathways and the Detection of Inborn Errors. German Conference on Bioinformatics (1996)
D. Beerbohm, S. Bresgen, Ralf Hofestädt, X. Huang
Dynamic Load Balancing Based on the Theory of Cellular Automata. EUROSIM (1994)
Ralf Hofestädt, Kurt Lautenbach, Markus Löffler
Workshop Modellierung der Zelldifferenzierung. Künstliche Intell. 8 (1) (1994)
U. Ashauer, Ralf Hofestädt
Ein wissensbasierter Ansatz zur Diagnose genetischer Krankheiten. GMDS (1994)
Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
1. Fachtagung "Informatik in den Biowissenschaften". Künstliche Intell. 7 (3) (1993)
Ralf Hofestädt
Grammatical Formalization of Metabolic Processes. ISMB (1993)
Dieter Schütt, Ralf Hofestädt
Bioinformatik und Umweltinformatik - neue Aspekte und Aufgaben der Informatik. Inform. Forsch. Entwickl. 7 (4) (1992)
Ralf Hofestädt
Simulation metabolischer Prozesse auf der Basis einer grammatikalischen Formalisierung. ASIM (1991)
Ralf Hofestädt
A Cellular Grammar to Model Metabolic Processes. MIE (1991)
Ch. Wojahn, Ralf Hofestädt, H.-P. Müller
VARY - The First Expert System for Analysis of Genome Variability. MIE (1991)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ralf Hofestädt