Hans-Peter Lenhof

ORCID

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 17

Top Venues

Bioinform.

Nucleic Acids Res.

Genom. Proteom. Bioinform.

Briefings Bioinform.

Saarland University, Saarbrücken, Germany (PHD)

Education History

Saarland University, Saarbrücken, Germany

PHD

Publications

Lea Eckhart, Kerstin Lenhof, Lisa-Marie Rolli, Hans-Peter Lenhof
A comprehensive benchmarking of machine learning algorithms and dimensionality reduction methods for drug sensitivity prediction. Briefings Bioinform. 25 (4) (2024)
Kerstin Lenhof, Lea Eckhart, Lisa-Marie Rolli, Hans-Peter Lenhof
Trust me if you can: a survey on reliability and interpretability of machine learning approaches for drug sensitivity prediction in cancer. Briefings Bioinform. 25 (5) (2024)
Kerstin Lenhof, Nico Gerstner, Tim Kehl, Lea Eckhart, Lara Schneider, Hans-Peter Lenhof
MERIDA: a novel Boolean logic-based integer linear program for personalized cancer therapy. Bioinform. 37 (21) (2021)
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRTargetLink 2.0 - interactive miRNA target gene and target pathway networks. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Tim Kehl, Fabian Kern, Christina Backes, Tobias Fehlmann, Daniel Stöckel, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Nico Gerstner, Tim Kehl, Kerstin Lenhof, Anne Müller, Carolin Mayer, Lea Eckhart, Nadja Liddy Grammes, Caroline Diener, Martin Hart, Oliver Hahn, Jörn Walter, Tony Wyss-Coray, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
GeneTrail 3: advanced high-throughput enrichment analysis. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinform. 35 (24) (2019)
Nicole Ludwig, Tobias Fehlmann, Fabian Kern, Manfred Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna-Katharina von Thaler, Christian Deuschle, Florian G. Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAs. Genom. Proteom. Bioinform. 17 (4) (2019)
Tim Kehl, Lara Schneider, Kathrin Kattler, Daniel Stöckel, Jenny Wegert, Nico Gerstner, Nicole Ludwig, Ute Distler, Markus Schick, Ulrich Keller, Stefan Tenzer, Manfred Gessler, Jörn Walter, Andreas Keller, Norbert M. Graf, Eckart Meese, Hans-Peter Lenhof
REGGAE: a novel approach for the identification of key transcriptional regulators. Bioinform. 34 (20) (2018)
Andreas Keller, Tobias Fehlmann, Nicole Ludwig, Mustafa Kahraman, Thomas Laufer, Christina Backes, Claus Vogelmeier, Caroline Diener, Frank Biertz, Christian Herr, Rudolf A. Jörres, Hans-Peter Lenhof, Eckart Meese, Robert Bals
Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development. Genom. Proteom. Bioinform. 16 (3) (2018)
Christina Backes, Tobias Fehlmann, Fabian Kern, Tim Kehl, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRCarta: a central repository for collecting miRNA candidates. Nucleic Acids Res. 46 (Database-Issue) (2018)
Tobias Fehlmann, Christina Backes, Julia Alles, Ulrike Fischer, Martin Hart, Fabian Kern, Hilde Langseth, Trine Rounge, Sinan Ugur Umu, Mustafa Kahraman, Thomas Laufer, Jan Haas, Cord Staehler, Nicole Ludwig, Matthias Hübenthal, Benjamin Meder, Andre Franke, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
A high-resolution map of the human small non-coding transcriptome. Bioinform. 34 (10) (2018)
Marc Hellmuth, Nicolas Wieseke, Marcus Lechner, Hans-Peter Lenhof, Martin Middendorf, Peter F. Stadler
Phylogenomics with Paralogs. CoRR (2017)
Christina Backes, Tim Kehl, Daniel Stöckel, Tobias Fehlmann, Lara Schneider, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRPathDB: a new dictionary on microRNAs and target pathways. Nucleic Acids Res. 45 (Database-Issue) (2017)
Tim Kehl, Lara Schneider, Florian Schmidt, Daniel Stöckel, Nico Gerstner, Christina Backes, Eckart Meese, Andreas Keller, Marcel H. Schulz, Hans-Peter Lenhof
RegulatorTrail: a web service for the identification of key transcriptional regulators. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Alexander Marx, Christina Backes, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon-Mann-Whitney Test. Genom. Proteom. Bioinform. 14 (1) (2016)
Daniel Stöckel, Tim Kehl, Patrick Trampert, Lara Schneider, Christina Backes, Nicole Ludwig, Andreas Gerasch, Michael Kaufmann, Manfred Gessler, Norbert M. Graf, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
Multi-omics enrichment analysis using the GeneTrail2 web service. Bioinform. 32 (10) (2016)
Daniel Stöckel, Florian Schmidt, Patrick Trampert, Hans-Peter Lenhof
CausalTrail: Testing hypothesis using causal Bayesian networks. F1000Research 4 (2015)
Andreas Gerasch, Jan Küntzer, Peter Niermann, Daniel Stöckel, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
Network-based interactive navigation and analysis of large biological datasets. it Inf. Technol. 57 (1) (2015)
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
ballaxy: web services for structural bioinformatics. Bioinform. 31 (1) (2015)
Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35 (10) (2014)
Stefan Nickels, Daniel Stöckel, Sabine C. Mueller, Hans-Peter Lenhof, Andreas Hildebrandt, Anna Katharina Dehof
PresentaBALL - A powerful package for presentations and lessons in structural biology. BioVis (2013)
Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann, Hans-Peter Lenhof
NetworkTrail - a web service for identifying and visualizing deregulated subnetworks. Bioinform. 29 (13) (2013)
Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof, Andreas Hildebrandt
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinform. 14 (2013)
Anna Katharina Hildebrandt, Ernst Althaus, Hans-Peter Lenhof, Chien-Wen Hung, Andreas Tholey, Andreas Hildebrandt
Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics. GCB (2013)
Stefan Nickels, Hienke Sminia, Sabine C. Mueller, Bas Kools, Anna Katharina Dehof, Hans-Peter Lenhof, Andreas Hildebrandt
ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences. IV (2012)
Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinform. 13 (2012)
Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt
Automated bond order assignment as an optimization problem. Bioinform. 27 (5) (2011)
Mike Phillips, Iliyan Georgiev, Anna Katharina Dehof, Stefan Nickels, Lukas Marsalek, Hans-Peter Lenhof, Andreas Hildebrandt, Philipp Slusallek
Measuring properties of molecular surfaces using ray casting. IPDPS Workshops (2010)
Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher
BALL - biochemical algorithms library 1.3. BMC Bioinform. 11 (2010)
Lukas Marsalek, Anna Katharina Dehof, Iliyan Georgiev, Hans-Peter Lenhof, Philipp Slusallek, Andreas Hildebrandt
Real-Time Ray Tracing of Complex Molecular Scenes. IV (2010)
Kay Nieselt, Michael Kaufmann, Andreas Gerasch, Hans-Peter Lenhof, Marcel Spehr, Stefan Hesse, Stefan Gumhold
Visuelle Analytik biologischer Daten. Inform. Spektrum 33 (6) (2010)
Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann
A new Lamarckian genetic algorithm for flexible ligand-receptor docking. J. Comput. Chem. 31 (9) (2010)
Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof
A consensus line search algorithm for molecular potential energy functions. J. Comput. Chem. 30 (9) (2009)
Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann
A new method for the gradient-based optimization of molecular complexes. J. Comput. Chem. 30 (9) (2009)
Andreas Keller, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof
Large-scale antibody profiling of human blood sera: The future of molecular diagnosis. Inform. Spektrum 32 (4) (2009)
Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert
Integer Linear Programming in Computational Biology. Efficient Algorithms (2009)
Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinform. 25 (21) (2009)
Anna Katharina Dehof, Alexander Rurainski, Hans-Peter Lenhof, Andreas Hildebrandt
Automated Bond Order Assignment as an Optimization Problem. GCB (2009)
Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinform. 9 (2008)
Christina Backes, Andreas Keller, Jan Küntzer, Benny Kneissl, Nicole Comtesse, Yasser A. Elnakady, Rolf Müller, Eckart Meese, Hans-Peter Lenhof
GeneTrail - advanced gene set enrichment analysis. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof
Electrostatic potentials of proteins in water: a structured continuum approach. Bioinform. 23 (2) (2007)
Jan Küntzer, Benny Kneissl, Oliver Kohlbacher, Hans-Peter Lenhof
Abstract analysis of pathways using the BN++ software framework. BMC Syst. Biol. 1 (S-1) (2007)
Andreas Keller, Nicole Comtesse, Nicole Ludwig, Eckart Meese, Hans-Peter Lenhof
SePaCS - a web-based application for classification of seroreactivity profiles. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
BNDB - The Biochemical Network Database. BMC Bioinform. 8 (2007)
Andreas Keller, Christina Backes, Hans-Peter Lenhof
Computation of significance scores of unweighted Gene Set Enrichment Analyses. BMC Bioinform. 8 (2007)
Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
A branch-and-cut algorithm for multiple sequence alignment. Math. Program. 105 (2-3) (2006)
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
BALLView: a tool for research and education in molecular modeling. Bioinform. 22 (3) (2006)
Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7 (2006)
Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
BN++ - A Biological Information System. J. Integr. Bioinform. 3 (2) (2006)
Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans-Peter Lenhof, Christian G. Huber
Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. Computational Proteomics (2005)
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
BALLView: An object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des. 19 (11) (2005)
Christina Backes, Jan Küntzer, Hans-Peter Lenhof, Nicole Comtesse, Eckart Meese
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Ralf Hofestädt, Hans-Peter Lenhof
Molekulare Bioinformatik. it Inf. Technol. 46 (1) (2004)
Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller
A Combinatorial Approach to Protein Docking with Flexible Side Chains. J. Comput. Biol. 9 (4) (2002)
Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. ECCB (2002)
Marite Sirava, T. Schäfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof
BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. ECCB (2002)
Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof
A NMR-spectra-based scoring function for protein docking. RECOMB (2001)
Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller
A combinatorial approach to protein docking with flexible side-chains. RECOMB (2000)
Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb
Simulating synthetic polymer chains in parallel. Future Gener. Comput. Syst. 16 (5) (2000)
Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof
Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL). ACM J. Exp. Algorithmics 5 (2000)
Ralf Hofestädt, Hans-Peter Lenhof
Workshop "Molekulare Bioinformatik". GI Jahrestagung (2000)
John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron
A polyhedral approach to sequence alignment problems. Discret. Appl. Math. 104 (1-3) (2000)
Oliver Kohlbacher, Hans-Peter Lenhof
BALL-rapid software prototyping in computational molecular biology. Bioinform. 16 (9) (2000)
Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof
BALL: Biochemical Algorithms Library. WAE (1999)
Oliver Kohlbacher, Hans-Peter Lenhof
Rapid Software Prototyping in Computational Molecular Biology. German Conference on Bioinformatics (1999)
Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb
Simulating Synthetic Polymer Chains in Parallel. HPCN Europe (1999)
Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron
-gram based database searching using a suffix array (QUASAR). RECOMB (1999)
Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinform. 15 (3) (1999)
Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics (1998)
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
A polyhedral approach to RNA sequence structure alignment. RECOMB (1998)
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
A Polyhedral Approach to RNA Sequence Structure Alignment. J. Comput. Biol. 5 (3) (1998)
Hans-Peter Lenhof
New contact measures for the protein docking problem. RECOMB (1997)
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu
A branch-and-cut algorithm for multiple sequence alignment. RECOMB (1997)
Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb
Parallel MD-Simulations of Synthetic Polymers. PPSC (1997)
Hans-Peter Lenhof, Michiel H. M. Smid
Sequential and parallel algorithms for the k closest pairs problem. Int. J. Comput. Geom. Appl. 5 (3) (1995)
Amitava Datta, Hans-Peter Lenhof, Christian Schwarz, Michiel H. M. Smid
-Point Clustering Problems. J. Algorithms 19 (3) (1995)
Hans-Peter Lenhof, Michiel H. M. Smid
Maintaining the Visibility Map of Spheres While Moving the Viewpoint on a Circle at Infinity. Algorithmica 13 (3) (1995)
Hans-Peter Lenhof, Michiel H. M. Smid
Using Persistent Data Structures for Adding Range Restrictions to Searching Problems. RAIRO Theor. Informatics Appl. 28 (1) (1994)
Hans-Peter Lenhof, Michiel H. M. Smid
An Animation of a Fixed-Radius All-Nearest-Neighbors Algorithm. SCG (1994)
Hans-Peter Lenhof, Michiel H. M. Smid
An optimal construction method for generalized convex layers. Int. J. Comput. Geom. Appl. 3 (3) (1993)
Amitava Datta, Hans-Peter Lenhof, Christian Schwarz, Michiel H. M. Smid
Static and Dynamic Algorithms for k-Point Clustering Problems. WADS (1993)
Hans-Peter Lenhof, Michiel H. M. Smid
Maintaining the Visibility Map of Spheres while Moving the Viewpoint on a Circle at Infinity. SWAT (1992)
Hans-Peter Lenhof, Michiel H. M. Smid
Enumerating the k Closest Pairs Optimally FOCS (1992)
Hans-Peter Lenhof, Michiel H. M. Smid
An Optimal Construction Method for Generalized Convex Layers. ISA (1991)

Hans-Peter Lenhof.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Hans-Peter Lenhof