Andreas Keller

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 45

Top Topics

Transcriptional Regulatory

Top Venues

Nucleic Acids Res.

Genom. Proteom. Bioinform.

Briefings Bioinform.

Publications

Takuya Kihara, Andreas Keller, Takumi Ogawa, Mehran Armand, Alejandro Martin-Gomez
Evaluating the Feasibility of Using Augmented Reality for Tooth Preparation. VR Workshops (2024)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic Acids Res. 51 (W1) (2023)
Xiaorui Zhang, Andreas Keller, Mehran Armand, Alejandro Martin-Gomez
Feasibility Study of Using Augmented Mirrors for Alignment Task during Orthopaedic Procedures in Mixed Reality. ISMAR-Adjunct (2023)
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller
isomiRdb: microRNA expression at isoform resolution. Nucleic Acids Res. 51 (D1) (2023)
Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic Acids Res. 50 (W1) (2022)
Jacqueline Rehner, Georges Pierre Schmartz, Laura Groeger, Jan Dastbaz, Nicole Ludwig, Matthias Hannig, Stefan Rupf, Berthold Seitz, Elias Flockerzi, Tim Berger, Matthias Christian Reichert, Marcin Krawczyk, Eckart Meese, Christian Herr, Robert Bals, Sören L. Becker, Andreas Keller, Rolf Müller
Systematic Cross-biospecimen Evaluation of DNA Extraction Kits for Long- and Short-read Multi-metagenomic Sequencing Studies. Genom. Proteom. Bioinform. 20 (2) (2022)
Alejandro Martin-Gomez, Jakob Weiss, Andreas Keller, Ulrich Eck, Daniel Roth, Nassir Navab
The Impact of Focus and Context Visualization Techniques on Depth Perception in Optical See-Through Head-Mounted Displays. IEEE Trans. Vis. Comput. Graph. 28 (12) (2022)
Andreas Keller, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray, Eckart Meese, Tobias Fehlmann, Nicole Ludwig
miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic Acids Res. 50 (D1) (2022)
Anouck Becker, Georges Pierre Schmartz, Laura Gröger, Nadja Liddy Grammes, Valentina Galata, Hannah Philippeit, Jacqueline Weiland, Nicole Ludwig, Eckart Meese, Sascha Tierling, Jörn Walter, Andreas Schwiertz, Jörg Spiegel, Gudrun Wagenpfeil, Klaus Faßbender, Andreas Keller, Marcus M. Unger
Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson's Disease - The RESISTA-PD Trial. Genom. Proteom. Bioinform. 20 (2) (2022)
Georges P. Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller
PLSDB: advancing a comprehensive database of bacterial plasmids. Nucleic Acids Res. 50 (D1) (2022)
Georges P. Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller, Andreas Keller
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning. Nucleic Acids Res. 50 (W1) (2022)
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRTargetLink 2.0 - interactive miRNA target gene and target pathway networks. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Daniel Roth, Kevin Yu, Frieder Pankratz, Gleb Gorbachev, Andreas Keller, Marc Lazarovici, Dirk Wilhelm, Simon Weidert, Nassir Navab, Ulrich Eck
Real-time Mixed Reality Teleconsultation for Intensive Care Units in Pandemic Situations. VR Workshops (2021)
Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas Keller
Aviator: a web service for monitoring the availability of web services. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Tobias Fehlmann, Fabian Kern, Omar Laham, Christina Backes, Jeffrey Solomon, Pascal Hirsch, Carsten Volz, Rolf Müller, Andreas Keller
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Tim Kehl, Fabian Kern, Christina Backes, Tobias Fehlmann, Daniel Stöckel, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Fabian Kern, Tobias Fehlmann, Jeffrey Solomon, Louisa Schwed, Nadja Liddy Grammes, Christina Backes, Kendall Van Keuren-Jensen, David W. Craig, Eckart Meese, Andreas Keller
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Fabian Kern, Jérémy Amand, Ilya Senatorov, Alina Isakova, Christina Backes, Eckart Meese, Andreas Keller, Tobias Fehlmann
miRSwitch: detecting microRNA arm shift and switch events. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Fabian Kern, Christina Backes, Pascal Hirsch, Tobias Fehlmann, Martin Hart, Eckart Meese, Andreas Keller
What's the target: understanding two decades of in silico microRNA-target prediction. Briefings Bioinform. 21 (6) (2020)
Nico Gerstner, Tim Kehl, Kerstin Lenhof, Anne Müller, Carolin Mayer, Lea Eckhart, Nadja Liddy Grammes, Caroline Diener, Martin Hart, Oliver Hahn, Jörn Walter, Tony Wyss-Coray, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
GeneTrail 3: advanced high-throughput enrichment analysis. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Tobias Fehlmann, Shashwat Sahay, Andreas Keller, Christina Backes
A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites. Briefings Bioinform. 20 (3) (2019)
Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller
PLSDB: a resource of complete bacterial plasmids. Nucleic Acids Res. 47 (Database-Issue) (2019)
Valentina Galata, Cedric Christian Laczny, Christina Backes, Georg Hemmrich-Stanisak, Susanne Schmolke, Andre Franke, Eckart Meese, Mathias Herrmann, Lutz von Müller, Achim Plum, Rolf Müller, Cord Stähler, Andreas E. Posch, Andreas Keller
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11, 087 Clinical Isolates. Genom. Proteom. Bioinform. 17 (2) (2019)
Jérémy Amand, Tobias Fehlmann, Christina Backes, Andreas Keller
DynaVenn: web-based computation of the most significant overlap between ordered sets. BMC Bioinform. 20 (1) (2019)
Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinform. 35 (24) (2019)
Cedric Christian Laczny, Valentina Galata, Achim Plum, Andreas E. Posch, Andreas Keller
Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates. Briefings Bioinform. 20 (3) (2019)
Nicole Ludwig, Tobias Fehlmann, Fabian Kern, Manfred Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna-Katharina von Thaler, Christian Deuschle, Florian G. Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAs. Genom. Proteom. Bioinform. 17 (4) (2019)
Tim Kehl, Lara Schneider, Kathrin Kattler, Daniel Stöckel, Jenny Wegert, Nico Gerstner, Nicole Ludwig, Ute Distler, Markus Schick, Ulrich Keller, Stefan Tenzer, Manfred Gessler, Jörn Walter, Andreas Keller, Norbert M. Graf, Eckart Meese, Hans-Peter Lenhof
REGGAE: a novel approach for the identification of key transcriptional regulators. Bioinform. 34 (20) (2018)
Andreas Keller, Tobias Fehlmann, Nicole Ludwig, Mustafa Kahraman, Thomas Laufer, Christina Backes, Claus Vogelmeier, Caroline Diener, Frank Biertz, Christian Herr, Rudolf A. Jörres, Hans-Peter Lenhof, Eckart Meese, Robert Bals
Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development. Genom. Proteom. Bioinform. 16 (3) (2018)
Valeria Palmieri, Christina Backes, Nicole Ludwig, Tobias Fehlmann, Fabian Kern, Eckart Meese, Andreas Keller
IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions. Nucleic Acids Res. 46 (Database-Issue) (2018)
Christina Backes, Tobias Fehlmann, Fabian Kern, Tim Kehl, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
miRCarta: a central repository for collecting miRNA candidates. Nucleic Acids Res. 46 (Database-Issue) (2018)
Tobias Fehlmann, Christina Backes, Julia Alles, Ulrike Fischer, Martin Hart, Fabian Kern, Hilde Langseth, Trine Rounge, Sinan Ugur Umu, Mustafa Kahraman, Thomas Laufer, Jan Haas, Cord Staehler, Nicole Ludwig, Matthias Hübenthal, Benjamin Meder, Andre Franke, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
A high-resolution map of the human small non-coding transcriptome. Bioinform. 34 (10) (2018)
Valentina Galata, Christina Backes, Cedric Christian Laczny, Georg Hemmrich-Stanisak, Howard Li, Laura Smoot, Andreas E. Posch, Susanne Schmolke, Markus Bischoff, Lutz von Müller, Achim Plum, Andre Franke, Andreas Keller
Comparing genome versus proteome-based identification of clinical bacterial isolates. Briefings Bioinform. 19 (3) (2018)
Jörn Bethune, Lars Kraemer, Ingo Thomsen, Andreas Keller, David Ellinghaus, Andre Franke
LitDB - Keeping Track of Research Papers From Your Institute Made Simple. Source Code Biol. Medicine 12 (1) (2017)
Christina Backes, Tim Kehl, Daniel Stöckel, Tobias Fehlmann, Lara Schneider, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRPathDB: a new dictionary on microRNAs and target pathways. Nucleic Acids Res. 45 (Database-Issue) (2017)
Cedric Christian Laczny, Christina Kiefer, Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller
BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Tim Kehl, Lara Schneider, Florian Schmidt, Daniel Stöckel, Nico Gerstner, Christina Backes, Eckart Meese, Andreas Keller, Marcel H. Schulz, Hans-Peter Lenhof
RegulatorTrail: a web service for the identification of key transcriptional regulators. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Alexander Marx, Christina Backes, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon-Mann-Whitney Test. Genom. Proteom. Bioinform. 14 (1) (2016)
Daniel Stöckel, Tim Kehl, Patrick Trampert, Lara Schneider, Christina Backes, Nicole Ludwig, Andreas Gerasch, Michael Kaufmann, Manfred Gessler, Norbert M. Graf, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
Multi-omics enrichment analysis using the GeneTrail2 web service. Bioinform. 32 (10) (2016)
Benjamin Meder, Hugo A. Katus, Andreas Keller
Computational Cardiology - A New Discipline of Translational Research. Genom. Proteom. Bioinform. 14 (4) (2016)
Rouven Nietsch, Jan Haas, Alan Lai, Daniel Oehler, Stefan Mester, Karen S. Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Andreas Keller, Benjamin Meder
The Role of Quality Control in Targeted Next-generation Sequencing Library Preparation. Genom. Proteom. Bioinform. 14 (4) (2016)
Christina Backes, Qurratulain T. Khaleeq, Eckart Meese, Andreas Keller
miEAA: microRNA enrichment analysis and annotation. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina
StructMAn: annotation of single-nucleotide polymorphisms in the structural context. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
BALL-SNPgp - from genetic variants toward computational diagnostics. Bioinform. 32 (12) (2016)
Michael Backes, Pascal Berrang, Anna Hecksteden, Mathias Humbert, Andreas Keller, Tim Meyer
Privacy in Epigenetics: Temporal Linkability of MicroRNA Expression Profiles. USENIX Security Symposium (2016)
Sabine C. Mueller, Christina Backes, Jan Haas, Hugo A. Katus, Benjamin Meder, Eckart Meese, Andreas Keller
Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy. Briefings Bioinform. 16 (5) (2015)
Sachli Zafari, Christina Backes, Petra Leidinger, Eckart Meese, Andreas Keller
Regulatory MicroRNA Networks: Complex Patterns of Target Pathways for Disease-related and Housekeeping MicroRNAs. Genom. Proteom. Bioinform. 13 (3) (2015)
Christian Apprich, Klaus Höllig, Jörg Hörner, Andreas Keller, Esfandiar Nava Yazdani
Finite Element Approximation with Hierarchical B-Splines. Curves and Surfaces (2014)
Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann, Hans-Peter Lenhof
NetworkTrail - a web service for identifying and visualizing deregulated subnetworks. Bioinform. 29 (13) (2013)
Oliver Zettinig, Tommaso Mansi, Bogdan Georgescu, Saikiran Rapaka, Ali Kamen, Jan Haas, Karen S. Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Ali Amr, Stefan Hardt, Derliz Mereles, Henning Steen, Andreas Keller, Hugo A. Katus, Benjamin Meder, Nassir Navab, Dorin Comaniciu
From Medical Images to Fast Computational Models of Heart Electromechanics: An Integrated Framework towards Clinical Use. FIMH (2013)
Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinform. 13 (2012)
Cord F. Stähler, Andreas Keller, Petra Leidinger, Christina Backes, Anoop Chandran, Jöerg Wischhusen, Benjamin Meder, Eckart Meese
Whole miRNome-wide Differential Co-expression of MicroRNAs. Genom. Proteom. Bioinform. 10 (5) (2012)
Andreas Fischer, Andreas Keller, Volkmar Frinken, Horst Bunke
Lexicon-free handwritten word spotting using character HMMs. Pattern Recognit. Lett. 33 (7) (2012)
Andreas Fischer, Andreas Keller, Volkmar Frinken, Horst Bunke
HMM-based Word Spotting in Handwritten Documents Using Subword Models. ICPR (2010)
Andreas Keller, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof
Large-scale antibody profiling of human blood sera: The future of molecular diagnosis. Inform. Spektrum 32 (4) (2009)
Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinform. 25 (21) (2009)
Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinform. 9 (2008)
Christina Backes, Andreas Keller, Jan Küntzer, Benny Kneissl, Nicole Comtesse, Yasser A. Elnakady, Rolf Müller, Eckart Meese, Hans-Peter Lenhof
GeneTrail - advanced gene set enrichment analysis. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Andreas Keller, Nicole Comtesse, Nicole Ludwig, Eckart Meese, Hans-Peter Lenhof
SePaCS - a web-based application for classification of seroreactivity profiles. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Andreas Keller, Christina Backes, Hans-Peter Lenhof
Computation of significance scores of unweighted Gene Set Enrichment Analyses. BMC Bioinform. 8 (2007)
Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7 (2006)
Andreas Keller, Thomas Baehring, H. Krause, H. Richter, V. Natchkova
Videodensitometrische und Videotopometrische Messungen in Röntgenbildern. Bildverarbeitung für die Medizin (1996)