Genom. Proteom. Bioinform.

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Publications

volume 22, number 1, 2024

Jianting An, Jing Wang, Siming Kong, Shi Song, Wei Chen, Peng Yuan, Qilong He, Yidong Chen, Ye Li, Yi Yang, Wei Wang, Rong Li, Liying Yan, Zhiqiang Yan, Jie Qiao
GametesOmics: A Comprehensive Multi-omics Database for Exploring the Gametogenesis in Humans and Mice. Genom. Proteom. Bioinform. 22 (1) (2024)
Gang-Qing Hu, Li Liu, Dong Xu
On the Responsible Use of Chatbots in Bioinformatics. Genom. Proteom. Bioinform. 22 (1) (2024)
Yiling Elaine Chen, Xinzhou Ge, Kyla Woyshner, Meilu McDermott, Antigoni Manousopoulou, Scott B. Ficarro, Jarrod A. Marto, Kexin Li, Leo David Wang, Jingyi Jessica Li
APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control. Genom. Proteom. Bioinform. 22 (1) (2024)
Chao Li, Bingchun Chen, Suo Langda, Peng Pu, Xiaojia Zhu, Shiwei Zhou, Peter Kalds, Ke Zhang, Meenu Bhati, Alexander Leonard, Shuhong Huang, Ran Li, Awang Cuoji, Xiran Wang, Haolin Zhu, Yujiang Wu, Renqin Cuomu, Ba Gui, Ming Li, Yutao Wang, Yan Li, Wenwen Fang, Ting Jia, Tianchun Pu, Xiangyu Pan, Yudong Cai, Chong He, Liming Wang, Yu Jiang, Jian-Lin Han, Yulin Chen, Ping Zhou, Hubert Pausch, Xiaolong Wang
Multi-omic Analyses Shed Light on The Genetic Control of High-altitude Adaptation in Sheep. Genom. Proteom. Bioinform. 22 (1) (2024)
Ke-Jia Shan, Changcheng Wu, Xiaolu Tang, Roujian Lu, Yaling Hu, Wenjie Tan, Jian Lu
Molecular Evolution of Protein Sequences and Codon Usage in Monkeypox Viruses. Genom. Proteom. Bioinform. 22 (1) (2024)
Correction to: dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms. Genom. Proteom. Bioinform. 22 (1) (2024)
Ke Chen, Thomas Litfin, Jaswinder Singh, Jian Zhan, Yaoqi Zhou
MARS and RNAcmap3: The Master Database of All Possible RNA Sequences Integrated with RNAcmap for RNA Homology Search. Genom. Proteom. Bioinform. 22 (1) (2024)
Ming Xiao, Rui Wei, Jun Yu, Chujie Gao, Fengyi Yang, Le Zhang
CpG Island Definition and Methylation Mapping of the T2T-YAO Genome. Genom. Proteom. Bioinform. 22 (1) (2024)
Bingbing Hao, Kaifeng Chen, Linhui Zhai, Muyin Liu, Bin Liu, Minjia Tan
Substrate and Functional Diversity of Protein Lysine Post-translational Modifications. Genom. Proteom. Bioinform. 22 (1) (2024)
Binzhong Wang, Bin Wu, Xueqing Liu, Yacheng Hu, Yao Ming, Mingzhou Bai, Juanjuan Liu, Kan Xiao, Qingkai Zeng, Jing Yang, Hongqi Wang, Baifu Guo, Chun Tan, Zixuan Hu, Xun Zhao, Yanhong Li, Zhen Yue, Junpu Mei, Wei Jiang, Yuanjin Yang, Zhiyuan Li, Yong Gao, Lei Chen, Jianbo Jian, Hejun Du
Whole-genome Sequencing Reveals Autooctoploidy in Chinese Sturgeon and Its Evolutionary Trajectories. Genom. Proteom. Bioinform. 22 (1) (2024)
Gunhwan Ko, Jae Ho Lee, Young Mi Sim, Wangho Song, Byung-Ha Yoon, Iksu Byeon, Bang Hyuck Lee, Sangok Kim, Jinhyuk Choi, Insoo Jang, Hyerin Kim, Jin Ok Yang, Kiwon Jang, Sora Kim, Jong-Hwan Kim, Jongbum Jeon, Jaeeun Jung, Seungwoo Hwang, Ji-Hwan Park, Pan-Gyu Kim, Seon-Young Kim, Byungwook Lee
KoNA: Korean Nucleotide Archive as A New Data Repository for Nucleotide Sequence Data. Genom. Proteom. Bioinform. 22 (1) (2024)
Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions. Genom. Proteom. Bioinform. 22 (1) (2024)
Acknowledgments to Reviewers 2023. Genom. Proteom. Bioinform. 22 (1) (2024)
Wenju Liu, Chuan Chen, Yawei Gao, Xinyu Cui, Yuhan Zhang, Liang Gu, Yuanlin He, Jing Li, Shaorong Gao, Rui Gao, Cizhong Jiang
Transcriptome Dynamics and Cell Dialogs Between Oocytes and Granulosa Cells in Mouse Follicle Development. Genom. Proteom. Bioinform. 22 (1) (2024)
Tao Yu, Yingfeng Luo, Xinyu Tan, Dahe Zhao, Xiaochun Bi, Chenji Li, Yanning Zheng, Hua Xiang, Songnian Hu
Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products. Genom. Proteom. Bioinform. 22 (1) (2024)
Ziming Jiang, Yanhong Wu, Yuxin Miao, Kaige Deng, Fan Yang, Shuhuan Xu, Yupeng Wang, Renke You, Lei Zhang, Yuhan Fan, Wenbo Guo, Qiuyu Lian, Lei Chen, Xuegong Zhang, Yongchang Zheng, Jin Gu
HCCDB v2.0: Decompose Expression Variations by Single-cell RNA-seq and Spatial Transcriptomics in HCC. Genom. Proteom. Bioinform. 22 (1) (2024)
Fang Chen, Bin Liu, Meirong Chen, Zefei Jiang, Zhiliang Zhou, Ping Wu, Meng Zhang, Huan Jin, Linsen Li, Liuyan Lu, Huan Shang, Lei Liu, Weiyue Chen, Jianfeng Xu, Ruitao Sun, Guangming Wang, Jiao Zheng, Jifang Qi, Bo Yang, Lidong Zeng, Yan Li, Hui Lv, Nannan Zhao, Wen Wang, Jinsen Cai, Yongfeng Liu, Weiwei Luo, Juan Zhang, Yanhua Zhang, Jicai Fan, Haitao Dan, Xuesen He, Wei Huang, Lei Sun, Qin Yan
A Two-color Single-molecule Sequencing Platform and Its Clinical Applications. Genom. Proteom. Bioinform. 22 (1) (2024)
Xiaofei Yang, Gaoyang Zheng, Peng Jia, Songbo Wang, Kai Ye
Pindel-TD: A Tandem Duplication Detector Based on A Pattern Growth Approach. Genom. Proteom. Bioinform. 22 (1) (2024)
Wanlin Zhou, Haoran Shi, Zhiqiang Wang, Yuxin Huang, Lin Ni, Xudong Chen, Yan Liu, Haojie Li, Caixia Li, Yaxi Liu
Identification of Highly Repetitive Enhancers with Long-range Regulation Potential in Barley via STARR-seq. Genom. Proteom. Bioinform. 22 (1) (2024)
Liwen Xiao, Zhenqiang Zuo, Fangqing Zhao
Microbiome in Female Reproductive Health: Implications for Fertility and Assisted Reproductive Technologies. Genom. Proteom. Bioinform. 22 (1) (2024)
Correction to: Single-cell RNA Sequencing Reveals Sexually Dimorphic Transcriptome and Type 2 Diabetes Genes in Mouse Islet β Cells. Genom. Proteom. Bioinform. 22 (1) (2024)
Mohammad Saidur Rhaman, Muhammad Ali, Wenxiu Ye, Bosheng Li
Opportunities and Challenges in Advancing Plant Research with Single-cell Omics. Genom. Proteom. Bioinform. 22 (1) (2024)
Junhai Qi, Chenjie Feng, Yulin Shi, Jianyi Yang, Fa Zhang, Guojun Li, Renmin Han
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval. Genom. Proteom. Bioinform. 22 (1) (2024)
Jiang Hu, Zhuo Wang, Fan Liang, Shanlin Liu, Kai Ye, De-Peng Wang
NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads. Genom. Proteom. Bioinform. 22 (1) (2024)
Xi Wang, Qiwei Lian, Haoyu Dong, Shuo Xu, Yaru Su, Xiaohui Wu
Benchmarking Algorithms for Gene Set Scoring of Single-cell ATAC-seq Data. Genom. Proteom. Bioinform. 22 (1) (2024)
Yanni Li, Eline H. van den Berg, Alexander Kurilshikov, Dasha V Zhernakova, Ranko Gacesa, Shixian Hu, Esteban A Lopera-Maya, Alexandra Zhernakova, Raúl Aguirre-Gamboa, Patrick Deelen, Lude Franke, Jan A Kuivenhoven, Ilja M. Nolte, Serena Sanna, Harold Snieder, Morris A Swertz, Peter M. Visscher, Judith M. Vonk, Cisca Wijmenga, Vincent E. de Meijer, Robin P. F. Dullaart, Hans Blokzijl, Eleonora A. M. Festen, Jingyuan Fu, Rinse K. Weersma
Genome-wide Studies Reveal Genetic Risk Factors for Hepatic Fat Content. Genom. Proteom. Bioinform. 22 (1) (2024)
Hangxing Jia, Shengjun Tan, Yong E. Zhang
Chasing Sequencing Perfection: Marching Toward Higher Accuracy and Lower Costs. Genom. Proteom. Bioinform. 22 (1) (2024)
Zitian Huo, Yaqi Duan, Dongdong Zhan, Xizhen Xu, Nairen Zheng, Jing Cai, Ruifang Sun, Jianping Wang, Fang Cheng, Zhan Gao, Caixia Xu, Wanlin Liu, Yuting Dong, Sailong Ma, Qian Zhang, Yiyun Zheng, Liping Lou, Dong Kuang, Qian Chu, Jun Qin, Guoping Wang, Yi Wang
Proteomic Stratification of Prognosis and Treatment Options for Small Cell Lung Cancer. Genom. Proteom. Bioinform. 22 (1) (2024)
Correction to: m6A Profile Dynamics Indicates Regulation of Oyster Development by m6A-RNA Epitranscriptomes. Genom. Proteom. Bioinform. 22 (1) (2024)
Manickam Ashokkumar, Wenwen Mei, Jackson J. Peterson, Yuriko Harigaya, David M. Murdoch, David M. Margolis, Caleb Kornfein, Alexander X. Oesterling, Zhicheng Guo, Cynthia Rudin, Yuchao Jiang, Edward P. Browne
Integrated Single-cell Multiomic Analysis of HIV Latency Reversal Reveals Novel Regulators of Viral Reactivation. Genom. Proteom. Bioinform. 22 (1) (2024)
Peipei Wang, Juntao Lin, Xiangyang Zheng, Xingzhi Xu
RNase P: Beyond Precursor tRNA Processing. Genom. Proteom. Bioinform. 22 (1) (2024)

volume 21, number 5, 2023

volume 21, number 6, 2023