Zhenling Peng

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 22

Top Topics

Protein Structure

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Zongyang Du, Zhenling Peng, Jianyi Yang
RNA threading with secondary structure and sequence profile. Bioinform. 40 (2) (2024)
Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions. Genom. Proteom. Bioinform. 22 (1) (2024)
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51 (W1) (2023)
Kun Zhu, Hong Su, Zhenling Peng, Jianyi Yang
A unified approach to protein domain parsing with inter-residue distance matrix. Bioinform. 39 (2) (2023)
Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao, Lukasz A. Kurgan
CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information. Briefings Bioinform. 24 (1) (2023)
Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Zongyang Du, Zhenling Peng, Jianyi Yang
Toward the assessment of predicted inter-residue distance. Bioinform. 38 (4) (2022)
Wenkai Wang, Zhenling Peng, Jianyi Yang
Single-sequence protein structure prediction using supervised transformer protein language models. Nat. Comput. Sci. 2 (12) (2022)
Hong Su, Zhenling Peng, Jianyi Yang
Recognition of small molecule-RNA binding sites using RNA sequence and structure. Bioinform. 37 (1) (2021)
Lisha Ye, Peikun Wu, Zhenling Peng, Jianzhao Gao, Jian Liu, Jianyi Yang
Improved estimation of model quality using predicted inter-residue distance. Bioinform. 37 (21) (2021)
Saisai Sun, Wenkai Wang, Zhenling Peng, Jianyi Yang
RNA inter-nucleotide 3D closeness prediction by deep residual neural networks. Bioinform. 37 (8) (2021)
Zongyang Du, Shuo Pan, Qi Wu, Zhenling Peng, Jianyi Yang
CATHER: a novel threading algorithm with predicted contacts. Bioinform. 36 (7) (2020)
Qi Wu, Zhenling Peng, Ivan Anishchenko, Qian Cong, David Baker, Jianyi Yang
Protein contact prediction using metagenome sequence data and residual neural networks. Bioinform. 36 (1) (2020)
Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles. Bioinform. 35 (10) (2019)
Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang
Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods. Bioinform. 35 (6) (2019)
Zijuan Zhao, Zhenling Peng, Jianyi Yang
Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method. J. Chem. Inf. Model. 58 (7) (2018)
Qiaozhen Meng, Zhenling Peng, Jianyi Yang
CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction. Bioinform. 34 (15) (2018)
Qiqige Wuyun, Wei Zheng, Zhenling Peng, Jianyi Yang
A large-scale comparative assessment of methods for residue-residue contact prediction. Briefings Bioinform. 19 (2) (2018)
Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang
mTM-align: an algorithm for fast and accurate multiple protein structure alignment. Bioinform. 34 (10) (2018)
Runze Dong, Shuo Pan, Zhenling Peng, Yang Zhang, Jianyi Yang
mTM-align: a server for fast protein structure database search and multiple protein structure alignment. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Jiaqi Xia, Zhenling Peng, Dawei Qi, Hongbo Mu, Jianyi Yang
An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier. Bioinform. 33 (6) (2017)
Zhenling Peng, Lukasz A. Kurgan
On the Complementarity of the Consensus-Based Disorder Prediction. Pacific Symposium on Biocomputing (2012)