Michele Vendruscolo

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 9

Top Topics

Protein Interaction

Protein Structure

Molecular Dynamics

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Robert I. Horne, Jared Wilson-Godber, Alicia González Díaz, Z. Faidon Brotzakis, Srijit Seal, Rebecca C. Gregory, Andrea Possenti, Sean Chia, Michele Vendruscolo
Using Generative Modeling to Endow with Potency Initially Inert Compounds with Good Bioavailability and Low Toxicity. J. Chem. Inf. Model. 64 (3) (2024)
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51 (W1) (2023)
Marc Oeller, Ryan Kang, Rosie Bell, Hannes Ausserwöger, Pietro Sormanni, Michele Vendruscolo
Sequence-based prediction of pH-dependent protein solubility using CamSol. Briefings Bioinform. 24 (2) (2023)
András Hatos, João M. C. Teixeira, Susana Barrera-Vilarmau, Attila Horvath, Silvio C. E. Tosatto, Michele Vendruscolo, Mónika Fuxreiter
FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins. Nucleic Acids Res. 51 (W1) (2023)
András Hatos, Silvio C. E. Tosatto, Michele Vendruscolo, Mónika Fuxreiter
FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid-liquid phase separation and aggregation of proteins. Nucleic Acids Res. 50 (W1) (2022)
Thomas Löhr, Kai Kohlhoff, Gabriella T. Heller, Carlo Camilloni, Michele Vendruscolo
A kinetic ensemble of the Alzheimer's Aβ peptide. Nat. Comput. Sci. 1 (1) (2021)
Attila Horvath, Márton Miskei, Viktor Ambrus, Michele Vendruscolo, Mónika Fuxreiter
Sequence-based prediction of protein binding mode landscapes. PLoS Comput. Biol. 16 (5) (2020)
Damiano Piovesan, Francesco Tabaro, Lisanna Paladin, Marco Necci, Ivan Micetic, Carlo Camilloni, Norman E. Davey, Zsuzsanna Dosztányi, Bálint Mészáros, Alexander Miguel Monzon, Gustavo D. Parisi, Éva Schád, Pietro Sormanni, Peter Tompa, Michele Vendruscolo, Wim F. Vranken, Silvio C. E. Tosatto
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Edgar Liberis, Petar Velickovic, Pietro Sormanni, Michele Vendruscolo, Pietro Liò
Parapred: antibody paratope prediction using convolutional and recurrent neural networks. Bioinform. 34 (17) (2018)
Predrag Kukic, Arvind Kannan, Maurits J. J. Dijkstra, Sanne Abeln, Carlo Camilloni, Michele Vendruscolo
Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. PLoS Comput. Biol. 11 (10) (2015)
Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42 (Database-Issue) (2014)
Biao Fu, Aleksandr B. Sahakyan, Carlo Camilloni, Gian Gaetano Tartaglia, Emanuele Paci, Amedeo Caflisch, Michele Vendruscolo, Andrea Cavalli
ALMOST: An all atom molecular simulation toolkit for protein structure determination. J. Comput. Chem. 35 (14) (2014)
Anthony W. Fitzpatrick, Tuomas P. J. Knowles, Christopher A. Waudby, Michele Vendruscolo, Christopher M. Dobson
Inversion of the Balance between Hydrophobic and Hydrogen Bonding Interactions in Protein Folding and Aggregation. PLoS Comput. Biol. 7 (10) (2011)
Stefan Auer, Antonio Trovato, Michele Vendruscolo
A Condensation-Ordering Mechanism in Nanoparticle-Catalyzed Peptide Aggregation. PLoS Comput. Biol. 5 (8) (2009)
Tammy M. K. Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Liò, Tom L. Blundell
Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms. PLoS Comput. Biol. 4 (7) (2008)
Sebastian Pechmann, Emmanuel D. Levy, Gian Gaetano Tartaglia, Michele Vendruscolo
Competition between protein aggregation and protein complex formation. BMC Bioinform. 9 (S-10) (2008)
Stefan Auer, Filip Meersman, Christopher M. Dobson, Michele Vendruscolo
A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates. PLoS Comput. Biol. 4 (11) (2008)
Mookyung Cheon, Iksoo Chang, Sandipan Mohanty, Leila M. Luheshi, Christopher M. Dobson, Michele Vendruscolo, Giorgio Favrin
Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils. PLoS Comput. Biol. 3 (9) (2007)
Michele Vendruscolo
Protein folding using inter-residue contacts. 3DPVT (2002)