Vladimir N. Uversky

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 15

Top Topics

Computational Methods

Protein Function

Intrinsically Disordered

Top Venues

Comput. Biol. Medicine

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Sk. Sarif Hassan, Tanishta Bhattacharya, Debaleena Nawn, Ishana Jha, Pallab Basu, Elrashdy M. Redwan, Kenneth Lundstrom, Debmalya Barh, Bruno Silva Andrade, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Altijana Hromic-Jahjefendic, Wagner Baetas-da-Cruz, Ángel Serrano-Aroca, Vladimir N. Uversky
SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants. Comput. Biol. Medicine 170 (2024)
Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li
Predicting TF Proteins by Incorporating Evolution Information Through PSSM. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky
TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences. BIBM (2023)
Min Fang, Yufeng He, Zhihua Du, Vladimir N. Uversky
DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky
Inference of gene regulatory networks based on the Light Gradient Boosting Machine. Comput. Biol. Chem. 101 (2022)
Fatemeh Bayani, Negin Safaei Hashkavaei, Vladimir N. Uversky, Sina Mozaffari-Jovin, Yahya Sefidbakht
-terminal and receptor binding domains of the spike protein from the SARS-CoV-2 Omicron variant. Comput. Biol. Medicine 147 (2022)
Sarif Sk. Hassan, Alaa A. A. Aljabali, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Antonio Soares, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra Sherchan, Wagner Baetas-da-Cruz, Bruce D. Uhal, Nima Rezaei, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan, Guy W. Dayhoff II, Nicolas G. Bazan, Ángel Serrano-Aroca, Amr El-Demerdash, Yogendra Kumar Mishra, Giorgio Palù, Kazuo Takayama, Adam M. Brufsky, Murtaza M. Tambuwala
A unique view of SARS-CoV-2 through the lens of ORF8 protein. Comput. Biol. Medicine 133 (2021)
Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB (2021)
Sagnik Sen, Ashmita Dey, Sanghamitra Bandhyopadhyay, Vladimir N. Uversky, Ujjwal Maulik
Understanding structural malleability of the SARS-CoV-2 proteins and relation to the comorbidities. Briefings Bioinform. 22 (6) (2021)
Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia
Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions. Briefings Bioinform. 22 (5) (2021)
Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB (2020)
Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky
DeepAdd: Protein function prediction from k-mer embedding and additional features. Comput. Biol. Chem. 89 (2020)
Orkid Coskuner-Weber, Vladimir N. Uversky
Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β42. J. Chem. Inf. Model. 59 (2) (2019)
Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45 (Database-Issue) (2017)
Orkid Coskuner, Vladimir N. Uversky
: A New Clustering Algorithm for Disordered Proteins. J. Chem. Inf. Model. 57 (6) (2017)
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16 (2015)
Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42 (Database-Issue) (2014)
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15 (S-17) (2014)
Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough
: database of disordered protein predictions. Nucleic Acids Res. 41 (Database-Issue) (2013)
Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing (2012)
Vladimir Vacic, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva
Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder. PLoS Comput. Biol. 8 (10) (2012)
Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing (2012)
Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28 (12) (2012)
Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12 (2011)
Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4 (S-1) (2010)
Amrita Mohan, Vladimir N. Uversky, Predrag Radivojac
Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins. PLoS Comput. Biol. 5 (9) (2009)
Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4 (12) (2008)
Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker
Intrinsically Disordered Proteins in Human Diseases. BIBE (2007)
Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: Predictions and Applications. BIBE (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: An Update. BIBE (2007)
Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35 (Database-Issue) (2007)
Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP (2007)
Chad Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva
Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes. PLoS Comput. Biol. 2 (8) (2006)
Mauro Colafranceschi, Alfredo Colosimo, Joseph P. Zbilut, Vladimir N. Uversky, Alessandro Giuliani
Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study. J. Chem. Inf. Model. 45 (1) (2005)